Protein–RNA interactions for Protein: Q8IX30

SCUBE3, Signal peptide, CUB and EGF-like domain-containing protein 3, humanhuman

Predictions only

Length 993 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCUBE3Q8IX30 AC023157.3-201ENST00000619086 2088 ntBASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 ATP5G2P4-201ENST00000442175 420 ntBASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 NAA50-208ENST00000497255 789 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 AP005482.2-201ENST00000587889 310 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 AC107373.2-201ENST00000607735 490 ntBASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 WFDC1-204ENST00000613603 549 ntBASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 FAM156A-206ENST00000612915 2233 ntAPPRIS P2 TSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 PMP22-201ENST00000312280 1810 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
SCUBE3Q8IX30 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 COX5BP8-201ENST00000416911 349 ntBASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ARHGEF26-AS1-201ENST00000467912 628 ntTSL 3 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AC120045.2-201ENST00000567334 178 ntBASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AC133539.2-201ENST00000604757 467 ntBASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AL645728.2-202ENST00000641679 227 ntBASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 AL138799.1-201ENST00000448213 1675 ntBASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ZCCHC4-201ENST00000302874 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
SCUBE3Q8IX30 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 AC068587.6-202ENST00000641839 5619 ntBASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 THUMPD3-210ENST00000515662 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 C1QBPP1-201ENST00000400117 770 ntBASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 AC124283.3-201ENST00000570869 594 ntBASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
SCUBE3Q8IX30 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms