Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 CRYGEP-201ENST00000412192 528 ntBASIC14.18□□□□□ -0.14
USP43Q70EL4 VMO1-203ENST00000416307 712 ntTSL 2 BASIC14.18□□□□□ -0.14
USP43Q70EL4 MKNK2P1-201ENST00000437526 628 ntBASIC14.18□□□□□ -0.14
USP43Q70EL4 PRSS29P-201ENST00000440800 595 ntBASIC14.18□□□□□ -0.14
USP43Q70EL4 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC14.18□□□□□ -0.14
USP43Q70EL4 ARTN-206ENST00000472435 402 ntTSL 3 BASIC14.18□□□□□ -0.14
USP43Q70EL4 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC14.18□□□□□ -0.14
USP43Q70EL4 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.18□□□□□ -0.14
USP43Q70EL4 AL390334.1-205ENST00000555797 411 ntTSL 3 BASIC14.18□□□□□ -0.14
USP43Q70EL4 SNHG9-202ENST00000564014 471 ntBASIC14.18□□□□□ -0.14
USP43Q70EL4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.18□□□□□ -0.14
USP43Q70EL4 AC004706.3-202ENST00000621574 984 ntBASIC14.18□□□□□ -0.14
USP43Q70EL4 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 SPOCK3-202ENST00000357545 2936 ntAPPRIS P3 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 PLCB3-202ENST00000325234 3946 ntTSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC14.18□□□□□ -0.14
USP43Q70EL4 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.18□□□□□ -0.14
USP43Q70EL4 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.18□□□□□ -0.14
USP43Q70EL4 INTS4P1-203ENST00000641008 3683 ntBASIC14.18□□□□□ -0.14
USP43Q70EL4 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.18□□□□□ -0.14
USP43Q70EL4 UVRAG-201ENST00000356136 4123 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 PLEKHO2-201ENST00000323544 3720 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 GLIS2-202ENST00000433375 3705 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 FAAP100-202ENST00000425898 2996 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 NRP2-205ENST00000412873 2730 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 GLIS2-201ENST00000262366 4469 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 TTLL10-AS1-201ENST00000379317 3532 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 MPI-203ENST00000535694 1523 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC14.17□□□□□ -0.14
USP43Q70EL4 TMEM212-201ENST00000334567 1881 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 WDR77-201ENST00000235090 2576 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 MAGIX-208ENST00000616266 3295 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 SAFB-201ENST00000292123 3042 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.17□□□□□ -0.14
USP43Q70EL4 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.17□□□□□ -0.14
USP43Q70EL4 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC14.17□□□□□ -0.14
USP43Q70EL4 C20orf181-201ENST00000623918 480 ntBASIC14.17□□□□□ -0.14
USP43Q70EL4 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 HELZ2-204ENST00000467148 8064 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 FCHO1-206ENST00000594202 3214 ntTSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 AL359881.3-201ENST00000602640 1721 ntBASIC14.17□□□□□ -0.14
USP43Q70EL4 PITPNM2-201ENST00000280562 6785 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 AC127383.1-201ENST00000444697 1800 ntBASIC14.17□□□□□ -0.14
USP43Q70EL4 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 KIAA0895L-202ENST00000561621 3500 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 ARHGEF7-201ENST00000218789 5233 ntTSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 NEDD4L-205ENST00000400345 3647 ntAPPRIS P4 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 PROM2-203ENST00000403131 2922 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 LMNA-213ENST00000473598 2015 ntTSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.17□□□□□ -0.14
USP43Q70EL4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 VSIR-201ENST00000394957 4689 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USP43Q70EL4 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC14.17□□□□□ -0.14
USP43Q70EL4 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.17□□□□□ -0.14
USP43Q70EL4 RNF166-210ENST00000568683 1768 ntTSL 3 BASIC14.17□□□□□ -0.14
USP43Q70EL4 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC14.16□□□□□ -0.14
USP43Q70EL4 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC14.16□□□□□ -0.14
USP43Q70EL4 MTF2-202ENST00000370303 1951 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 ATP2B3-202ENST00000349466 4280 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
USP43Q70EL4 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC14.16□□□□□ -0.14
USP43Q70EL4 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 KCNJ18-201ENST00000567955 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 STK3-201ENST00000419617 2826 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC14.16□□□□□ -0.14
USP43Q70EL4 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 CD8A-203ENST00000409511 3048 ntAPPRIS P4 TSL 2 BASIC14.16□□□□□ -0.14
USP43Q70EL4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USP43Q70EL4 ARMCX2-201ENST00000328766 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 MED12L-203ENST00000422248 2757 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
USP43Q70EL4 CDH20-202ENST00000536675 2855 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USP43Q70EL4 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms