Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 METTL26-204ENST00000397665 558 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC16.66■□□□□ 0.26
KRT39Q6A163 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 AC004066.1-201ENST00000502488 802 ntBASIC16.66■□□□□ 0.26
KRT39Q6A163 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC16.66■□□□□ 0.26
KRT39Q6A163 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC16.66■□□□□ 0.26
KRT39Q6A163 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
KRT39Q6A163 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 INO80C-210ENST00000590757 595 ntTSL 2 BASIC16.66■□□□□ 0.26
KRT39Q6A163 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC16.66■□□□□ 0.26
KRT39Q6A163 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT39Q6A163 AL596257.1-201ENST00000641463 2694 ntBASIC16.66■□□□□ 0.26
KRT39Q6A163 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 BRAP-201ENST00000327551 1947 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 ZBED1P1-201ENST00000502364 1930 ntBASIC16.66■□□□□ 0.26
KRT39Q6A163 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 SP140L-204ENST00000444636 1781 ntTSL 5 BASIC16.66■□□□□ 0.26
KRT39Q6A163 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 AP002414.2-201ENST00000591780 3365 ntBASIC16.66■□□□□ 0.26
KRT39Q6A163 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 ITPR3-201ENST00000374316 9870 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
KRT39Q6A163 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
KRT39Q6A163 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 TCP1-201ENST00000321394 2499 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
KRT39Q6A163 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.65■□□□□ 0.26
KRT39Q6A163 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC16.65■□□□□ 0.26
KRT39Q6A163 POR-201ENST00000394893 2532 ntTSL 5 BASIC16.65■□□□□ 0.26
KRT39Q6A163 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
KRT39Q6A163 RAI2-204ENST00000451717 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 NSUN5P1-204ENST00000428392 1562 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT39Q6A163 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC16.65■□□□□ 0.26
KRT39Q6A163 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 WDR53-203ENST00000429115 683 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT39Q6A163 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC16.65■□□□□ 0.26
KRT39Q6A163 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT39Q6A163 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT39Q6A163 AC123567.1-201ENST00000548294 1261 ntBASIC16.65■□□□□ 0.26
KRT39Q6A163 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT39Q6A163 AC107373.2-201ENST00000607735 490 ntBASIC16.65■□□□□ 0.26
KRT39Q6A163 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 TNRC18P2-201ENST00000417666 2714 ntBASIC16.65■□□□□ 0.26
KRT39Q6A163 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 AMT-232ENST00000636199 1546 ntTSL 5 BASIC16.65■□□□□ 0.26
KRT39Q6A163 GSN-215ENST00000545652 2428 ntTSL 2 BASIC16.65■□□□□ 0.26
KRT39Q6A163 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
KRT39Q6A163 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
KRT39Q6A163 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
KRT39Q6A163 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.26
KRT39Q6A163 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.26
KRT39Q6A163 NAALADL1-203ENST00000356632 2118 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 GUCD1-206ENST00000435822 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 SHANK3-201ENST00000262795 7091 ntAPPRIS P5 TSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
KRT39Q6A163 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.64■□□□□ 0.25
KRT39Q6A163 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
KRT39Q6A163 PIN1P1-201ENST00000412108 996 ntBASIC16.64■□□□□ 0.25
KRT39Q6A163 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC16.64■□□□□ 0.25
KRT39Q6A163 AL442647.2-201ENST00000429864 857 ntBASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 33.9 ms