Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 TIMP3-201ENST00000266085 4603 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.65■□□□□ 0.58
VPS53Q5VIR6 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
VPS53Q5VIR6 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS53Q5VIR6 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS53Q5VIR6 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC18.64■□□□□ 0.58
VPS53Q5VIR6 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 DMAP1-203ENST00000372289 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 HTR3A-203ENST00000375498 2235 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 AL353779.1-201ENST00000434793 351 ntBASIC18.64■□□□□ 0.57
VPS53Q5VIR6 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 AC123567.1-201ENST00000548294 1261 ntBASIC18.64■□□□□ 0.57
VPS53Q5VIR6 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 CTBP2P3-201ENST00000585629 1255 ntBASIC18.64■□□□□ 0.57
VPS53Q5VIR6 TBCB-211ENST00000589996 724 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 TCAF2P1-201ENST00000291129 2421 ntBASIC18.64■□□□□ 0.57
VPS53Q5VIR6 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 CICP11-201ENST00000434745 2827 ntBASIC18.64■□□□□ 0.57
VPS53Q5VIR6 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
VPS53Q5VIR6 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 STRN-202ENST00000379213 2254 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 GALT-202ENST00000450095 1280 ntTSL 2 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 ELK1P1-201ENST00000485699 580 ntBASIC18.63■□□□□ 0.57
VPS53Q5VIR6 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 AC036164.1-201ENST00000570544 333 ntBASIC18.63■□□□□ 0.57
VPS53Q5VIR6 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 AC025181.2-201ENST00000606994 802 ntBASIC18.63■□□□□ 0.57
VPS53Q5VIR6 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
VPS53Q5VIR6 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 ST6GAL2-204ENST00000409382 7275 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 CTSD-201ENST00000236671 2123 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 CMPK1-203ENST00000371873 2930 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 OPA1-203ENST00000361715 6384 ntTSL 5 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 DGCR5-201ENST00000399539 862 ntBASIC18.62■□□□□ 0.57
VPS53Q5VIR6 AL035633.1-201ENST00000406139 838 ntBASIC18.62■□□□□ 0.57
VPS53Q5VIR6 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 MEP1AP4-201ENST00000423244 1087 ntBASIC18.62■□□□□ 0.57
VPS53Q5VIR6 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 TP53TG3HP-202ENST00000569755 579 ntBASIC18.62■□□□□ 0.57
VPS53Q5VIR6 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
VPS53Q5VIR6 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms