Protein–RNA interactions for Protein: Q07699

SCN1B, Sodium channel subunit beta-1, humanhuman

Predictions only

Length 218 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1BQ07699 PLAGL1-201ENST00000354765 3663 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 GHSR-201ENST00000241256 1172 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 IGHV3-22-201ENST00000520721 359 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 SLC25A6P4-201ENST00000586535 553 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 AC023141.13-201ENST00000604991 943 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 Z83851.2-201ENST00000609564 659 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC13.86□□□□□ -0.19
SCN1BQ07699 AC010507.1-201ENST00000633895 436 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 AC007064.4-201ENST00000637740 555 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 SH3BP5L-201ENST00000366472 3861 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC13.86□□□□□ -0.19
SCN1BQ07699 LGALSL-201ENST00000238875 3926 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 LRRFIP1-203ENST00000308482 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 NUP210-201ENST00000254508 7193 ntAPPRIS P1 TSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 SLC4A11-202ENST00000380059 3229 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 HLA-A-201ENST00000376802 1334 ntBASIC13.86□□□□□ -0.19
SCN1BQ07699 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC13.86□□□□□ -0.19
SCN1BQ07699 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 DNAH14-204ENST00000366849 2215 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 PRNP-203ENST00000430350 2539 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 RSPO3-201ENST00000356698 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 WNT9B-202ENST00000393461 2654 ntTSL 2 BASIC13.86□□□□□ -0.19
SCN1BQ07699 SPECC1-202ENST00000395522 2982 ntTSL 1 (best) BASIC13.86□□□□□ -0.19
SCN1BQ07699 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 DBN1-203ENST00000393565 2701 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 CDCA2-201ENST00000330560 3731 ntAPPRIS P3 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 PLIN4-201ENST00000301286 6353 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC13.85□□□□□ -0.19
SCN1BQ07699 KHK-201ENST00000260598 2397 ntAPPRIS P5 TSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AC104109.2-201ENST00000602919 1418 ntBASIC13.85□□□□□ -0.19
SCN1BQ07699 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
SCN1BQ07699 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 TJP2-208ENST00000535702 3984 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 C15orf52-206ENST00000559313 3022 ntAPPRIS P2 TSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
SCN1BQ07699 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 HCG4B-203ENST00000450128 991 ntBASIC13.85□□□□□ -0.19
SCN1BQ07699 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 EHF-205ENST00000527935 557 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC13.85□□□□□ -0.19
SCN1BQ07699 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC13.85□□□□□ -0.19
SCN1BQ07699 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 AC092634.8-201ENST00000639687 773 ntTSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 DDR1-271ENST00000513240 2882 ntAPPRIS ALT2 TSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 STRN-202ENST00000379213 2254 ntTSL 5 BASIC13.85□□□□□ -0.19
SCN1BQ07699 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC13.85□□□□□ -0.19
SCN1BQ07699 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC13.85□□□□□ -0.19
SCN1BQ07699 BCAR1-209ENST00000546196 1340 ntBASIC13.85□□□□□ -0.19
SCN1BQ07699 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 PITRM1-206ENST00000451104 3183 ntTSL 2 BASIC13.85□□□□□ -0.19
SCN1BQ07699 ASAH1-258ENST00000637790 3042 ntAPPRIS P2 TSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 WIPI2-211ENST00000484262 1504 ntTSL 1 (best) BASIC13.85□□□□□ -0.19
SCN1BQ07699 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC13.85□□□□□ -0.19
SCN1BQ07699 IKBKB-217ENST00000520810 3086 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC13.84□□□□□ -0.19
SCN1BQ07699 NR1H3-221ENST00000481889 1704 ntTSL 5 BASIC13.84□□□□□ -0.19
SCN1BQ07699 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
SCN1BQ07699 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 AC036214.1-201ENST00000502766 2126 ntTSL 2 BASIC13.84□□□□□ -0.19
SCN1BQ07699 PCDHB16-201ENST00000609684 5001 ntAPPRIS P1 BASIC13.84□□□□□ -0.19
SCN1BQ07699 LINC00475-202ENST00000416438 2506 ntTSL 2 BASIC13.84□□□□□ -0.19
SCN1BQ07699 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 CRLS1-201ENST00000378863 3958 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
SCN1BQ07699 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
Retrieved 100 of 98,524 protein–RNA pairs in 72.8 ms