Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 RNFT2-203ENST00000392549 2896 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
CX3CL1P78423 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
CX3CL1P78423 Z97205.2-201ENST00000564697 1639 ntBASIC12.51□□□□□ -0.41
CX3CL1P78423 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CL1P78423 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CL1P78423 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 OR2I1P-210ENST00000642037 4691 ntBASIC12.51□□□□□ -0.41
CX3CL1P78423 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CL1P78423 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 SLC8B1-201ENST00000202831 2975 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 AL512638.1-201ENST00000457493 794 ntBASIC12.51□□□□□ -0.41
CX3CL1P78423 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC12.51□□□□□ -0.41
CX3CL1P78423 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CL1P78423 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.51□□□□□ -0.41
CX3CL1P78423 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC12.51□□□□□ -0.41
CX3CL1P78423 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 ZNF280D-207ENST00000559237 4902 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 CTNS-202ENST00000381870 2470 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 DXO-203ENST00000375356 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 C12orf42-201ENST00000378113 1513 ntAPPRIS P2 TSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 P2RY1-201ENST00000305097 6747 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
CX3CL1P78423 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC12.51□□□□□ -0.41
CX3CL1P78423 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 AC138904.3-201ENST00000635780 2681 ntTSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
CX3CL1P78423 MALSU1-202ENST00000466681 3044 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 ARHGEF5-201ENST00000056217 5544 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
CX3CL1P78423 AC087481.3-201ENST00000602886 1894 ntBASIC12.51□□□□□ -0.41
CX3CL1P78423 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
CX3CL1P78423 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 NOP9-201ENST00000267425 6033 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 BCAR1-204ENST00000418647 3387 ntAPPRIS ALT2 TSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 SMAD2-202ENST00000356825 10445 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 LAPTM5-201ENST00000294507 2223 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 NUP98-203ENST00000359171 7023 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 KCNMA1-202ENST00000286628 6233 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
CX3CL1P78423 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 FAM149B1-201ENST00000242505 5408 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
CX3CL1P78423 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 TSSK5P-201ENST00000423978 907 ntBASIC12.5□□□□□ -0.41
CX3CL1P78423 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC12.5□□□□□ -0.41
CX3CL1P78423 USP40-206ENST00000443711 628 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 CYMP-203ENST00000474680 1263 ntBASIC12.5□□□□□ -0.41
CX3CL1P78423 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC12.5□□□□□ -0.41
CX3CL1P78423 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC12.5□□□□□ -0.41
CX3CL1P78423 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms