Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 RSPH3-201ENST00000252655 2175 ntAPPRIS P2 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC12.57□□□□□ -0.4
LMO4P61968 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
LMO4P61968 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
LMO4P61968 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 SOWAHB-201ENST00000334306 3220 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
LMO4P61968 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 MST1L-201ENST00000442552 2185 ntBASIC12.56□□□□□ -0.4
LMO4P61968 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
LMO4P61968 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
LMO4P61968 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC12.56□□□□□ -0.4
LMO4P61968 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC12.56□□□□□ -0.4
LMO4P61968 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 EIF4EBP3-201ENST00000310331 691 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 CSH1-201ENST00000316193 900 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 MIR663B-201ENST00000408361 115 ntBASIC12.56□□□□□ -0.4
LMO4P61968 TISP43-201ENST00000409793 538 ntTSL 4 BASIC12.56□□□□□ -0.4
LMO4P61968 BCYRN1-201ENST00000418539 200 ntBASIC12.56□□□□□ -0.4
LMO4P61968 AC079178.1-201ENST00000420915 656 ntBASIC12.56□□□□□ -0.4
LMO4P61968 SAP30L-202ENST00000426761 777 ntTSL 3 BASIC12.56□□□□□ -0.4
LMO4P61968 RGS5-214ENST00000429865 754 ntTSL 3 BASIC12.56□□□□□ -0.4
LMO4P61968 IQCF3-203ENST00000444293 450 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 HSPB1P2-201ENST00000448722 546 ntBASIC12.56□□□□□ -0.4
LMO4P61968 APOA2-204ENST00000464492 530 ntTSL 3 BASIC12.56□□□□□ -0.4
LMO4P61968 OARD1-212ENST00000482515 832 ntTSL 2 BASIC12.56□□□□□ -0.4
LMO4P61968 GDNF-AS1-201ENST00000503382 604 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 MESTP3-201ENST00000503460 968 ntBASIC12.56□□□□□ -0.4
LMO4P61968 FTLP10-202ENST00000505798 471 ntBASIC12.56□□□□□ -0.4
LMO4P61968 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC12.56□□□□□ -0.4
LMO4P61968 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
LMO4P61968 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC12.56□□□□□ -0.4
LMO4P61968 AC106820.3-201ENST00000561653 397 ntBASIC12.56□□□□□ -0.4
LMO4P61968 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
LMO4P61968 LINC00479-204ENST00000589300 718 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 ZACNP1-201ENST00000612259 710 ntBASIC12.56□□□□□ -0.4
LMO4P61968 AC244157.2-201ENST00000616239 1006 ntBASIC12.56□□□□□ -0.4
LMO4P61968 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 AC138466.3-201ENST00000619983 221 ntBASIC12.56□□□□□ -0.4
LMO4P61968 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 CBFB-201ENST00000290858 3136 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC12.56□□□□□ -0.4
LMO4P61968 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC12.56□□□□□ -0.4
LMO4P61968 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 CLUHP2-201ENST00000426660 1303 ntBASIC12.56□□□□□ -0.4
LMO4P61968 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 AL157414.3-201ENST00000624276 1954 ntBASIC12.56□□□□□ -0.4
LMO4P61968 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC12.56□□□□□ -0.4
LMO4P61968 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
LMO4P61968 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
LMO4P61968 ACSL1-208ENST00000507295 2490 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC12.55□□□□□ -0.4
LMO4P61968 HARS-202ENST00000415192 1401 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
LMO4P61968 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 CCNE1-203ENST00000444983 1680 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
LMO4P61968 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC12.55□□□□□ -0.4
LMO4P61968 HIST1H2AD-201ENST00000341023 393 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
LMO4P61968 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
LMO4P61968 KRTAP10-13P-201ENST00000412914 571 ntBASIC12.55□□□□□ -0.4
LMO4P61968 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC12.55□□□□□ -0.4
LMO4P61968 AC053503.1-201ENST00000429882 519 ntTSL 3 BASIC12.55□□□□□ -0.4
LMO4P61968 AC004898.1-201ENST00000451057 766 ntBASIC12.55□□□□□ -0.4
LMO4P61968 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC12.55□□□□□ -0.4
LMO4P61968 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms