Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 C6orf52-202ENST00000379586 430 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 AC074338.1-201ENST00000416825 156 ntBASIC13.63□□□□□ -0.23
CX3CR1P49238 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 AC109322.1-201ENST00000524499 1264 ntBASIC13.63□□□□□ -0.23
CX3CR1P49238 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC13.63□□□□□ -0.23
CX3CR1P49238 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC13.63□□□□□ -0.23
CX3CR1P49238 SPDYE12P-201ENST00000618416 771 ntBASIC13.63□□□□□ -0.23
CX3CR1P49238 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 Z97205.2-201ENST00000564697 1639 ntBASIC13.63□□□□□ -0.23
CX3CR1P49238 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
CX3CR1P49238 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
CX3CR1P49238 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC13.63□□□□□ -0.23
CX3CR1P49238 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
CX3CR1P49238 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 MED15-202ENST00000292733 3252 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 SNX11-202ENST00000393405 2733 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 ZSCAN10-209ENST00000576985 2739 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 H2AFZ-201ENST00000296417 979 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 MIR1233-2-201ENST00000408138 82 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 MIR1233-1-201ENST00000408722 82 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC13.62□□□□□ -0.23
CX3CR1P49238 HLA-V-204ENST00000476601 1289 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 AC125807.1-201ENST00000483097 614 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 HLA-J-203ENST00000494367 1087 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC13.62□□□□□ -0.23
CX3CR1P49238 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC13.62□□□□□ -0.23
CX3CR1P49238 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC13.62□□□□□ -0.23
CX3CR1P49238 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC13.62□□□□□ -0.23
CX3CR1P49238 AC025048.3-201ENST00000590609 569 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 COQ4-205ENST00000609948 956 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 AC005702.4-201ENST00000618393 416 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 Z92544.3-201ENST00000624747 417 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC13.62□□□□□ -0.23
CX3CR1P49238 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
CX3CR1P49238 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 VARS2-201ENST00000321897 4073 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 PACSIN2-201ENST00000263246 3249 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 SNX18-202ENST00000343017 3140 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 GTPBP1-201ENST00000216044 5126 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 TTC13-201ENST00000366661 3253 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
CX3CR1P49238 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 USP47-207ENST00000527733 4525 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 TSPAN14-210ENST00000616406 2436 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 CICP11-201ENST00000434745 2827 ntBASIC13.62□□□□□ -0.23
CX3CR1P49238 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC13.62□□□□□ -0.23
CX3CR1P49238 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
CX3CR1P49238 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms