Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 AP001360.1-202ENST00000526934 479 ntTSL 3 BASIC16.02■□□□□ 0.16
PTPN9P43378 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC16.02■□□□□ 0.16
PTPN9P43378 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.02■□□□□ 0.16
PTPN9P43378 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.02■□□□□ 0.16
PTPN9P43378 GREM1-201ENST00000560677 623 ntTSL 4 BASIC16.02■□□□□ 0.16
PTPN9P43378 AL359711.2-201ENST00000563105 872 ntBASIC16.02■□□□□ 0.16
PTPN9P43378 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
PTPN9P43378 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.02■□□□□ 0.15
PTPN9P43378 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC16.02■□□□□ 0.15
PTPN9P43378 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 PNPLA5-202ENST00000381198 2000 ntTSL 2 BASIC16.02■□□□□ 0.15
PTPN9P43378 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.02■□□□□ 0.15
PTPN9P43378 TNRC18P2-201ENST00000417666 2714 ntBASIC16.02■□□□□ 0.15
PTPN9P43378 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 OAS1-202ENST00000445409 1684 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
PTPN9P43378 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC16.02■□□□□ 0.15
PTPN9P43378 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
PTPN9P43378 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 GRAPL-201ENST00000344415 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 RGR-201ENST00000358110 1349 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 AL360270.3-201ENST00000609118 1348 ntBASIC16.01■□□□□ 0.15
PTPN9P43378 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC16.01■□□□□ 0.15
PTPN9P43378 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 SLC9A7P1-202ENST00000556476 2239 ntBASIC16.01■□□□□ 0.15
PTPN9P43378 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 SOCS2P1-201ENST00000417727 557 ntBASIC16.01■□□□□ 0.15
PTPN9P43378 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.01■□□□□ 0.15
PTPN9P43378 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.01■□□□□ 0.15
PTPN9P43378 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 TP53TG3HP-202ENST00000569755 579 ntBASIC16.01■□□□□ 0.15
PTPN9P43378 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 AC008494.3-201ENST00000606615 944 ntBASIC16.01■□□□□ 0.15
PTPN9P43378 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC16.01■□□□□ 0.15
PTPN9P43378 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
PTPN9P43378 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC16.01■□□□□ 0.15
PTPN9P43378 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 ERRFI1-201ENST00000377482 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 LINC00528-201ENST00000600723 2160 ntBASIC16.01■□□□□ 0.15
PTPN9P43378 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 IL1RN-203ENST00000361779 1922 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.01■□□□□ 0.15
PTPN9P43378 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC16.01■□□□□ 0.15
PTPN9P43378 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
PTPN9P43378 USH1C-207ENST00000527720 2278 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
PTPN9P43378 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.01■□□□□ 0.15
PTPN9P43378 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 ZNF772-202ENST00000356584 1799 ntAPPRIS ALT2 TSL 2 BASIC16■□□□□ 0.15
PTPN9P43378 GPI-205ENST00000586425 1799 ntTSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PTPN9P43378 ACE3P-201ENST00000423435 1973 ntBASIC16■□□□□ 0.15
PTPN9P43378 TJAP1-207ENST00000436109 2572 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 RDM1-224ENST00000619262 1535 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 PI16-203ENST00000611814 2083 ntAPPRIS P1 TSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 AGER-206ENST00000375070 1463 ntTSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PTPN9P43378 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PTPN9P43378 NUS1P3-201ENST00000423502 862 ntBASIC16■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 36.6 ms