Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.04■□□□□ -0
HNF4AP41235 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 UGT1A2P-201ENST00000454886 866 ntBASIC15.04■□□□□ -0
HNF4AP41235 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC15.04■□□□□ -0
HNF4AP41235 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC15.04■□□□□ -0
HNF4AP41235 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 AC135586.1-201ENST00000539323 574 ntBASIC15.04■□□□□ -0
HNF4AP41235 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC15.04■□□□□ -0
HNF4AP41235 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 AQP6-203ENST00000551733 849 ntTSL 3 BASIC15.04■□□□□ -0
HNF4AP41235 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.04■□□□□ -0
HNF4AP41235 AC011491.2-201ENST00000599584 447 ntTSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 AC008738.7-201ENST00000609744 511 ntBASIC15.04■□□□□ -0
HNF4AP41235 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.04■□□□□ -0
HNF4AP41235 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 NUP88-207ENST00000573584 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC15.04■□□□□ -0
HNF4AP41235 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.04■□□□□ -0
HNF4AP41235 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC15.04■□□□□ -0
HNF4AP41235 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.04■□□□□ -0
HNF4AP41235 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.03■□□□□ -0
HNF4AP41235 AC138969.3-201ENST00000546612 1459 ntBASIC15.03■□□□□ -0
HNF4AP41235 AC138932.2-201ENST00000548268 1459 ntBASIC15.03■□□□□ -0
HNF4AP41235 AC126755.4-201ENST00000549796 1459 ntBASIC15.03■□□□□ -0
HNF4AP41235 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 ABHD14B-201ENST00000315877 2236 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.03■□□□□ -0
HNF4AP41235 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
HNF4AP41235 WDR53-203ENST00000429115 683 ntTSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC15.03■□□□□ -0
HNF4AP41235 AC009477.1-201ENST00000452936 217 ntBASIC15.03■□□□□ -0
HNF4AP41235 KRT18P43-201ENST00000469825 1281 ntBASIC15.03■□□□□ -0
HNF4AP41235 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.03■□□□□ -0
HNF4AP41235 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 AC004461.2-201ENST00000629517 803 ntBASIC15.03■□□□□ -0
HNF4AP41235 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 RIMS1-216ENST00000521978 5079 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 TNRC18P2-201ENST00000417666 2714 ntBASIC15.03■□□□□ -0
HNF4AP41235 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.03■□□□□ -0
HNF4AP41235 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 SMARCA2-203ENST00000349721 5761 ntTSL 5 BASIC15.03■□□□□ -0
HNF4AP41235 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
HNF4AP41235 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC15.02■□□□□ -0
HNF4AP41235 KCNQ4-201ENST00000347132 4099 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
HNF4AP41235 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 MAGEA8-204ENST00000535454 2112 ntAPPRIS P1 TSL 3 BASIC15.02■□□□□ -0
HNF4AP41235 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.02■□□□□ -0
HNF4AP41235 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.02■□□□□ -0
HNF4AP41235 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC15.02■□□□□ -0
HNF4AP41235 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 SULT1C4-201ENST00000272452 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC15.02■□□□□ -0
HNF4AP41235 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.02■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms