Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC19.77■□□□□ 0.76
COL18A1P39060 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 FHL1-207ENST00000394155 2706 ntTSL 5 BASIC19.77■□□□□ 0.76
COL18A1P39060 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC19.77■□□□□ 0.76
COL18A1P39060 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC19.77■□□□□ 0.76
COL18A1P39060 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC19.77■□□□□ 0.76
COL18A1P39060 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 CERS3-202ENST00000394113 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC19.77■□□□□ 0.76
COL18A1P39060 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC19.77■□□□□ 0.76
COL18A1P39060 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC19.77■□□□□ 0.76
COL18A1P39060 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 DUTP3-201ENST00000450025 415 ntBASIC19.77■□□□□ 0.76
COL18A1P39060 FTH1P22-201ENST00000456305 520 ntBASIC19.77■□□□□ 0.76
COL18A1P39060 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
COL18A1P39060 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC19.77■□□□□ 0.76
COL18A1P39060 APOC1P1-201ENST00000507983 630 ntTSL 4 BASIC19.77■□□□□ 0.76
COL18A1P39060 AP000842.2-201ENST00000533033 517 ntTSL 4 BASIC19.77■□□□□ 0.76
COL18A1P39060 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC19.77■□□□□ 0.76
COL18A1P39060 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC19.77■□□□□ 0.75
COL18A1P39060 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.77■□□□□ 0.75
COL18A1P39060 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
COL18A1P39060 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC19.76■□□□□ 0.75
COL18A1P39060 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 PTPA-206ENST00000358994 2664 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 Z99943.1-201ENST00000451545 718 ntTSL 3 BASIC19.76■□□□□ 0.75
COL18A1P39060 PFN2-206ENST00000461930 606 ntTSL 4 BASIC19.76■□□□□ 0.75
COL18A1P39060 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
COL18A1P39060 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC19.76■□□□□ 0.75
COL18A1P39060 ATP6V1D-206ENST00000554236 888 ntTSL 5 BASIC19.76■□□□□ 0.75
COL18A1P39060 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 ZNF790-AS1-203ENST00000588906 850 ntTSL 2 BASIC19.76■□□□□ 0.75
COL18A1P39060 BCL2L12-204ENST00000594157 620 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 AL022334.2-201ENST00000610000 484 ntBASIC19.76■□□□□ 0.75
COL18A1P39060 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 CSGALNACT1-211ENST00000522854 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 TMBIM7P-202ENST00000641474 1516 ntBASIC19.76■□□□□ 0.75
COL18A1P39060 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 RAN-210ENST00000541630 1475 ntTSL 2 BASIC19.76■□□□□ 0.75
COL18A1P39060 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC19.76■□□□□ 0.75
COL18A1P39060 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
COL18A1P39060 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC19.76■□□□□ 0.75
COL18A1P39060 AL139384.1-201ENST00000612143 3047 ntBASIC19.76■□□□□ 0.75
COL18A1P39060 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 AL583805.1-201ENST00000391389 531 ntBASIC19.75■□□□□ 0.75
COL18A1P39060 MNX1-AS2-201ENST00000429228 374 ntTSL 3 BASIC19.75■□□□□ 0.75
COL18A1P39060 ORAOV1P1-201ENST00000503108 395 ntBASIC19.75■□□□□ 0.75
COL18A1P39060 MSRB3-206ENST00000535664 964 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 NPIPB11-202ENST00000614927 1216 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 OSER1-201ENST00000255174 1572 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 MLF1-216ENST00000618075 2116 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 SIGLEC6-202ENST00000346477 1940 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
COL18A1P39060 LINC00334-203ENST00000638500 1377 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 RBM4B-206ENST00000531036 1646 ntTSL 2 BASIC19.75■□□□□ 0.75
COL18A1P39060 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC19.75■□□□□ 0.75
COL18A1P39060 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 EWSR1-204ENST00000333395 1265 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 OGFR-AS1-201ENST00000431361 668 ntTSL 2 BASIC19.75■□□□□ 0.75
COL18A1P39060 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 LRRC75A-AS1-209ENST00000481027 1016 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
COL18A1P39060 TPM1-223ENST00000560445 485 ntTSL 3 BASIC19.75■□□□□ 0.75
COL18A1P39060 AC027237.1-201ENST00000560942 655 ntBASIC19.75■□□□□ 0.75
COL18A1P39060 AL031713.1-201ENST00000564813 661 ntBASIC19.75■□□□□ 0.75
COL18A1P39060 LRRC75A-AS1-226ENST00000582911 879 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 AC005041.3-201ENST00000606287 649 ntBASIC19.75■□□□□ 0.75
COL18A1P39060 LINC00923-205ENST00000615399 932 ntTSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
COL18A1P39060 AC025271.4-201ENST00000621477 1726 ntBASIC19.75■□□□□ 0.75
COL18A1P39060 FOS-201ENST00000303562 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL18A1P39060 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 ENO3-202ENST00000518175 1448 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
COL18A1P39060 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 STK26-204ENST00000481105 1835 ntTSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 AC013726.1-201ENST00000563747 2285 ntBASIC19.74■□□□□ 0.75
COL18A1P39060 PSMD13-203ENST00000431206 1591 ntTSL 2 BASIC19.74■□□□□ 0.75
COL18A1P39060 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms