Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 LINC02447-202ENST00000501888 2146 ntBASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 AC063977.3-201ENST00000597569 547 ntTSL 4 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CSB-PGBD3P0DP91 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 ILF3-AS1-201ENST00000591501 1983 ntBASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 VCX3B-201ENST00000381029 756 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 AC007274.2-201ENST00000421675 662 ntBASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 AC104073.2-201ENST00000453737 312 ntBASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 AC239802.2-201ENST00000532137 554 ntTSL 4 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 LINC02332-201ENST00000557232 386 ntTSL 3 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 PRKXP1-201ENST00000561423 1122 ntBASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 SRD5A3-AS1-211ENST00000599135 737 ntTSL 5 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 PCDHA12-202ENST00000613593 2588 ntBASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CSB-PGBD3P0DP91 SELPLG-201ENST00000228463 1704 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 NFIC-211ENST00000641145 8399 ntBASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 MPV17-201ENST00000233545 998 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 MRPS12-201ENST00000308018 1207 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 GDAP1-202ENST00000434412 1228 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 AP000356.1-201ENST00000438893 364 ntTSL 3 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 RN7SL163P-201ENST00000583100 276 ntBASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 BNIP3P13-201ENST00000599968 566 ntBASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 C20orf141-202ENST00000603872 580 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 MBD3L2B-202ENST00000637800 774 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 AC004923.1-202ENST00000642106 209 ntBASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 GFRA2-208ENST00000524240 4921 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 CPA5-201ENST00000393213 1444 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 KIF1BP-214ENST00000638119 2537 ntTSL 5 BASIC20.24■□□□□ 0.83
CSB-PGBD3P0DP91 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms