Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 HCG9-201ENST00000376800 663 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC25.68■■□□□ 1.7
CUX2O14529 RPL3P5-201ENST00000441645 1232 ntBASIC25.68■■□□□ 1.7
CUX2O14529 HIST1H2APS2-201ENST00000454426 370 ntBASIC25.68■■□□□ 1.7
CUX2O14529 AC005486.1-201ENST00000466775 216 ntTSL 3 BASIC25.68■■□□□ 1.7
CUX2O14529 RHOH-206ENST00000505618 1225 ntAPPRIS P1 TSL 4 BASIC25.68■■□□□ 1.7
CUX2O14529 ACTN1-AS1-202ENST00000553961 599 ntTSL 4 BASIC25.68■■□□□ 1.7
CUX2O14529 MED11-202ENST00000573708 802 ntTSL 2 BASIC25.68■■□□□ 1.7
CUX2O14529 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CUX2O14529 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC25.68■■□□□ 1.7
CUX2O14529 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC25.68■■□□□ 1.7
CUX2O14529 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
CUX2O14529 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
CUX2O14529 KIR2DL4-207ENST00000396293 715 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 RPSAP15-201ENST00000448168 861 ntBASIC25.67■■□□□ 1.7
CUX2O14529 HMGB3-204ENST00000448905 812 ntAPPRIS P2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 TAGLN3-203ENST00000455401 1164 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 CTB-178M22.2-201ENST00000519795 503 ntTSL 4 BASIC25.67■■□□□ 1.7
CUX2O14529 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC25.67■■□□□ 1.7
CUX2O14529 CYB561A3-208ENST00000536915 1094 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
CUX2O14529 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC25.67■■□□□ 1.7
CUX2O14529 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC25.67■■□□□ 1.7
CUX2O14529 CYP4F36P-201ENST00000589193 186 ntBASIC25.67■■□□□ 1.7
CUX2O14529 PROX1-AS1-235ENST00000628896 711 ntTSL 5 BASIC25.67■■□□□ 1.7
CUX2O14529 AC079325.2-202ENST00000641031 462 ntAPPRIS ALT2 BASIC25.67■■□□□ 1.7
CUX2O14529 AC079325.2-201ENST00000641710 606 ntAPPRIS P5 BASIC25.67■■□□□ 1.7
CUX2O14529 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 SHMT2-202ENST00000414700 2006 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 AC015909.3-201ENST00000572855 1794 ntBASIC25.67■■□□□ 1.7
CUX2O14529 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC25.67■■□□□ 1.7
CUX2O14529 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 FAM180B-201ENST00000538490 1388 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
CUX2O14529 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC25.66■■□□□ 1.7
CUX2O14529 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
CUX2O14529 AC107871.2-202ENST00000563057 396 ntTSL 2 BASIC25.66■■□□□ 1.7
CUX2O14529 AC006483.2-201ENST00000609813 515 ntBASIC25.66■■□□□ 1.7
CUX2O14529 AC011451.3-201ENST00000634951 582 ntTSL 3 BASIC25.66■■□□□ 1.7
CUX2O14529 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC25.66■■□□□ 1.7
CUX2O14529 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC25.66■■□□□ 1.7
CUX2O14529 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC25.66■■□□□ 1.7
CUX2O14529 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC25.66■■□□□ 1.7
CUX2O14529 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC25.66■■□□□ 1.7
CUX2O14529 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC25.66■■□□□ 1.7
CUX2O14529 KIR2DS4-201ENST00000339924 1608 ntAPPRIS P5 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 LINC01165-201ENST00000445190 1623 ntBASIC25.66■■□□□ 1.7
CUX2O14529 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 TMPRSS4-211ENST00000522307 1634 ntTSL 2 BASIC25.66■■□□□ 1.7
CUX2O14529 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC25.66■■□□□ 1.7
CUX2O14529 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 PLAC8L1-201ENST00000311450 638 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 MIR1301-201ENST00000408518 82 ntBASIC25.66■■□□□ 1.7
CUX2O14529 AC002127.2-201ENST00000444032 792 ntTSL 3 BASIC25.66■■□□□ 1.7
CUX2O14529 RPL35P9-201ENST00000446059 350 ntBASIC25.66■■□□□ 1.7
CUX2O14529 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC25.66■■□□□ 1.7
CUX2O14529 FRMD4A-204ENST00000475141 1233 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 LINC02380-201ENST00000510956 1038 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 AC040162.4-201ENST00000574912 1185 ntAPPRIS P1 TSL 3 BASIC25.66■■□□□ 1.7
CUX2O14529 AC005962.1-201ENST00000584100 773 ntBASIC25.66■■□□□ 1.7
CUX2O14529 MIR6746-201ENST00000620971 63 ntBASIC25.66■■□□□ 1.7
CUX2O14529 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
CUX2O14529 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 AL513327.1-206ENST00000587696 1432 ntTSL 5 BASIC25.65■■□□□ 1.7
CUX2O14529 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 AC011676.5-201ENST00000624864 2660 ntBASIC25.65■■□□□ 1.7
CUX2O14529 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 AC020763.4-201ENST00000623414 4170 ntBASIC25.65■■□□□ 1.7
CUX2O14529 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 AGGF1P2-201ENST00000426656 2106 ntBASIC25.65■■□□□ 1.7
CUX2O14529 LINC00866-201ENST00000427379 418 ntTSL 2 BASIC25.65■■□□□ 1.7
CUX2O14529 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC25.65■■□□□ 1.7
CUX2O14529 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC25.65■■□□□ 1.7
CUX2O14529 AC063952.3-201ENST00000467756 308 ntBASIC25.65■■□□□ 1.7
CUX2O14529 ANKRD20A21P-201ENST00000611282 517 ntTSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 AC020904.3-201ENST00000624199 442 ntBASIC25.65■■□□□ 1.7
CUX2O14529 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
CUX2O14529 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CUX2O14529 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC25.64■■□□□ 1.7
CUX2O14529 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.7
CUX2O14529 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC25.64■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 59.6 ms