Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 C17orf107-201ENST00000381365 3199 ntAPPRIS P2 TSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 HDAC2-206ENST00000519108 2000 ntTSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 AC138969.3-201ENST00000546612 1459 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 AC138932.2-201ENST00000548268 1459 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 AC126755.4-201ENST00000549796 1459 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 CEP131-208ENST00000575907 3444 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 AC007787.1-201ENST00000588095 1583 ntBASIC16.09■□□□□ 0.17
CCDC188H7C350 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CCDC188H7C350 SLC26A11-202ENST00000411502 2872 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
CCDC188H7C350 PITPNM1-216ENST00000534749 4189 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 TCOF1-201ENST00000323668 4832 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 MIRLET7BHG-203ENST00000435439 2264 ntTSL 2 BASIC16.08■□□□□ 0.17
CCDC188H7C350 ARNT2-209ENST00000622346 2932 ntTSL 2 BASIC16.08■□□□□ 0.17
CCDC188H7C350 BBS2-201ENST00000245157 2963 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 AHCYL2-202ENST00000446544 5026 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 TAF5-201ENST00000369839 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 TLL1-206ENST00000513213 1829 ntTSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 ARHGAP4-203ENST00000370028 3372 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.17
CCDC188H7C350 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 RNF123-202ENST00000432042 2670 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 UHRF1-204ENST00000616255 2661 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 GAS2L2-203ENST00000618498 2655 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 PCDHGB5-202ENST00000621169 2670 ntAPPRIS ALT2 BASIC16.08■□□□□ 0.16
CCDC188H7C350 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 ANKRD44-203ENST00000409153 2724 ntTSL 2 BASIC16.08■□□□□ 0.16
CCDC188H7C350 TFAP2A-213ENST00000482890 2071 ntAPPRIS P3 TSL 5 BASIC16.08■□□□□ 0.16
CCDC188H7C350 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 RBM39-205ENST00000397370 612 ntTSL 2 BASIC16.08■□□□□ 0.16
CCDC188H7C350 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC16.08■□□□□ 0.16
CCDC188H7C350 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.08■□□□□ 0.16
CCDC188H7C350 SLC25A39P2-201ENST00000537614 270 ntBASIC16.08■□□□□ 0.16
CCDC188H7C350 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.08■□□□□ 0.16
CCDC188H7C350 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC16.08■□□□□ 0.16
CCDC188H7C350 LINC01230-201ENST00000625222 3017 ntBASIC16.08■□□□□ 0.16
CCDC188H7C350 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 SRSF8-201ENST00000587424 4028 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
CCDC188H7C350 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 SLC29A1-204ENST00000371731 2258 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
CCDC188H7C350 AC015802.1-201ENST00000588104 1449 ntBASIC16.08■□□□□ 0.16
CCDC188H7C350 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 ZBTB45P1-201ENST00000452761 1456 ntBASIC16.08■□□□□ 0.16
CCDC188H7C350 TEX28-203ENST00000617225 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC16.08■□□□□ 0.16
CCDC188H7C350 TAGLN2-202ENST00000368096 1603 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 VIPAS39-202ENST00000343765 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
CCDC188H7C350 ABHD16A-202ENST00000440843 1906 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 APCDD1L-201ENST00000371149 3426 ntAPPRIS P2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 AP001267.2-201ENST00000532619 2086 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 TNIP1-214ENST00000522226 2238 ntAPPRIS P3 TSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
CCDC188H7C350 PIANP-202ENST00000534837 2695 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 PLEKHA4-201ENST00000263265 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 SBF1P1-201ENST00000444527 5631 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
CCDC188H7C350 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 AL133267.1-201ENST00000398220 340 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 UBE2C-206ENST00000405520 641 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC188H7C350 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC16.07■□□□□ 0.16
CCDC188H7C350 AL591424.1-201ENST00000442569 1213 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC188H7C350 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC188H7C350 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC188H7C350 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC188H7C350 AC105021.1-202ENST00000570572 669 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 UBE2C-208ENST00000617055 705 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC188H7C350 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.07■□□□□ 0.16
CCDC188H7C350 AC055717.3-201ENST00000622967 595 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 AL365209.1-201ENST00000624418 6473 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 AKAP2-203ENST00000434623 4400 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 GATB-209ENST00000512306 1519 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 UXT-AS1-201ENST00000590504 1525 ntBASIC16.07■□□□□ 0.16
CCDC188H7C350 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC16.07■□□□□ 0.16
CCDC188H7C350 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
CCDC188H7C350 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC16.07■□□□□ 0.16
CCDC188H7C350 ZNF7-203ENST00000525266 1874 ntTSL 2 BASIC16.07■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms