Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 NUPL2-202ENST00000410002 680 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AL139420.2-201ENST00000449439 410 ntTSL 3 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC092862.1-201ENST00000541534 533 ntBASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC124068.2-201ENST00000569473 1109 ntBASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC008972.2-201ENST00000606587 494 ntBASIC11.69□□□□□ -0.54
COL6A5A8TX70 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 KRT8P31-201ENST00000504812 1408 ntBASIC11.69□□□□□ -0.54
COL6A5A8TX70 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC11.69□□□□□ -0.54
COL6A5A8TX70 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC11.69□□□□□ -0.54
COL6A5A8TX70 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 PTGES3L-AARSD1-202ENST00000409103 1670 ntTSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 ELP5-203ENST00000396627 1389 ntAPPRIS P2 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 GPD1-205ENST00000548814 1591 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 MRPL32-201ENST00000223324 1035 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 PPM1N-201ENST00000396735 895 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 DCAF7-201ENST00000415273 1220 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 Z82249.1-201ENST00000453866 568 ntTSL 4 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 PPM1N-208ENST00000456399 618 ntTSL 3 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 ADM-203ENST00000525063 867 ntAPPRIS P1 TSL 3 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 GOLGA2P7-209ENST00000560408 745 ntBASIC11.68□□□□□ -0.54
COL6A5A8TX70 AC004466.1-201ENST00000599515 1080 ntBASIC11.68□□□□□ -0.54
COL6A5A8TX70 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 UPK1A-204ENST00000617999 1268 ntAPPRIS P1 TSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 COX8C-201ENST00000342144 533 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SLC13A3-205ENST00000417157 876 ntTSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 AP001062.3-202ENST00000444409 619 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 VENTXP4-201ENST00000449029 958 ntBASIC11.68□□□□□ -0.54
COL6A5A8TX70 AL451000.1-201ENST00000451300 1186 ntBASIC11.68□□□□□ -0.54
COL6A5A8TX70 AL162377.1-202ENST00000456688 1181 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 LRRC75A-AS1-213ENST00000484836 821 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 AP003390.1-201ENST00000533253 523 ntTSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 AC068867.1-201ENST00000559855 150 ntBASIC11.68□□□□□ -0.54
COL6A5A8TX70 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 LITAF-202ENST00000381810 1527 ntTSL 5 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC11.68□□□□□ -0.54
COL6A5A8TX70 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC11.68□□□□□ -0.54
COL6A5A8TX70 AC011477.6-201ENST00000604980 1927 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 HS1BP3-203ENST00000406618 1375 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 C3orf33-205ENST00000534941 1804 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 REXO1L5P-201ENST00000622260 2098 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MBD3L3-201ENST00000333843 775 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 MBD3L4-201ENST00000381394 775 ntAPPRIS P1 TSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 KRT8P30-201ENST00000432100 650 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 RPS6KA2-AS1-201ENST00000455390 627 ntTSL 5 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 ATP1A4-205ENST00000470705 886 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 STAU2-212ENST00000521419 972 ntTSL 1 (best) BASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC068831.5-201ENST00000557387 328 ntBASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 FXYD6-FXYD2-202ENST00000614497 634 ntAPPRIS P1 TSL 3 BASIC11.67□□□□□ -0.54
COL6A5A8TX70 AC129778.1-201ENST00000623957 920 ntTSL 5 BASIC11.67□□□□□ -0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms