Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AL080243.2-201ENST00000418783 582 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 NME4-207ENST00000450036 985 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CYMP-203ENST00000474680 1263 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AC093904.3-201ENST00000492300 368 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 LEKR1-211ENST00000498839 616 ntTSL 3 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 LY6E-204ENST00000519546 971 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 DUX4L27-201ENST00000554796 1261 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CMC2-214ENST00000565925 640 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AL138828.2-201ENST00000615812 383 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 MIR6069-201ENST00000620069 79 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 FADS1-201ENST00000350997 4525 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 RRM1-214ENST00000534285 2075 ntTSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 AC232323.1-201ENST00000540724 2099 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 REXO1L5P-201ENST00000622260 2098 ntBASIC12.55□□□□□ -0.4
FOXA2Q9Y261 EXOC6B-202ENST00000410104 5795 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 KIAA1468-201ENST00000256858 5579 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
FOXA2Q9Y261 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CNN3-207ENST00000545882 1902 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AJ011931.1-201ENST00000618749 2492 ntBASIC12.54□□□□□ -0.4
FOXA2Q9Y261 EXT1-201ENST00000378204 8270 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 MBD1-217ENST00000588937 1761 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 NOTCH4-201ENST00000375023 6745 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 BAG1-210ENST00000634734 3786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AC011467.4-201ENST00000594891 528 ntBASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 RAB34-223ENST00000636154 730 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 TAF11-201ENST00000361288 1580 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CIAPIN1-201ENST00000394391 2182 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 MBD1-211ENST00000585595 2179 ntAPPRIS ALT2 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CATSPER4-202ENST00000456354 1912 ntAPPRIS P2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 LINC00926-201ENST00000501726 2530 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 TNFRSF11A-202ENST00000586569 8147 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
FOXA2Q9Y261 TBK1-201ENST00000331710 3256 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 70.1 ms