Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 LRRC37A5P-201ENST00000374304 1103 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 RHOG-203ENST00000396979 1289 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 RHOG-204ENST00000533217 886 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC069262.1-201ENST00000539058 672 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC010336.2-201ENST00000564226 506 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 MIR3687-2-201ENST00000577708 61 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 AC010327.4-202ENST00000591484 748 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 MIR3687-1-201ENST00000614492 61 ntBASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 PDGFRL-201ENST00000251630 1901 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 PRKD2-206ENST00000595515 3012 ntTSL 2 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 HSDL1-201ENST00000219439 3519 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 C5orf66-206ENST00000624272 2479 ntTSL 2 BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
LIMA1Q9UHB6 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 HNF4A-202ENST00000316673 1470 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 KIF3A-202ENST00000378746 6325 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 MFRP-201ENST00000360167 1663 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 SCLT1-209ENST00000511426 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 PPP6R2P1-201ENST00000450880 1275 ntBASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 TEX28P1-201ENST00000613479 1221 ntBASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 TEX28P2-201ENST00000617764 1221 ntBASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 NUMBL-201ENST00000252891 3561 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 CECR7-202ENST00000441006 2726 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 LILRP1-201ENST00000444199 1370 ntBASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 TLX1NB-202ENST00000445873 1862 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 OPCML-IT1-201ENST00000533859 2936 ntTSL 2 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 AIFM1-209ENST00000535724 2468 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
LIMA1Q9UHB6 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SLC39A9-209ENST00000556605 2065 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 AC067930.6-201ENST00000623257 4947 ntBASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 FLI1-207ENST00000534087 3859 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 POLR2E-211ENST00000612655 1749 ntAPPRIS P1 TSL 3 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PDIA4-201ENST00000286091 2903 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 AC139749.1-202ENST00000617529 3139 ntBASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 UPF3AP3-201ENST00000420996 769 ntBASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 AC000095.1-201ENST00000603208 874 ntBASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 GPR39-203ENST00000622084 900 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 TRAK1-208ENST00000484786 2008 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 LDLRAD4-205ENST00000585931 2118 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 HIF3A-218ENST00000600383 2101 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 SV2A-201ENST00000369145 2903 ntTSL 2 BASIC16.85■□□□□ 0.29
LIMA1Q9UHB6 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 43.3 ms