Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PDPK2P-202ENST00000562415 1191 ntBASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 RARRES2P8-201ENST00000566335 367 ntBASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 SLC25A6P4-201ENST00000586535 553 ntBASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 HOXA11-AS1_5.1-201ENST00000620211 203 ntBASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ZNF782-205ENST00000481138 4213 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PARVB-201ENST00000338758 5429 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ZNF395-201ENST00000344423 4808 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 KCNN2-201ENST00000264773 2512 ntAPPRIS P2 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 COL8A2-201ENST00000303143 4447 ntAPPRIS P1 TSL 2 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 APBB1-221ENST00000609360 2642 ntAPPRIS ALT1 TSL 5 BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC13.42□□□□□ -0.26
CHMP1AQ9HD42 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 TKT-202ENST00000423516 2075 ntTSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 EPAS1-201ENST00000263734 5166 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AMIGO2-201ENST00000266581 3763 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 TM4SF4-201ENST00000305354 2101 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 RNA5SP419-201ENST00000515908 135 ntBASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 GPAT2-202ENST00000434632 3061 ntAPPRIS P1 TSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 GPR83-201ENST00000243673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ZBTB7B-207ENST00000535420 3777 ntAPPRIS P3 TSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 RNF170-209ENST00000534961 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 CPSF1-212ENST00000616140 4494 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 RAB43-202ENST00000393304 4230 ntAPPRIS P1 TSL 4 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 NOTCH1-201ENST00000277541 9371 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 PLXNB1-201ENST00000296440 7143 ntAPPRIS P2 TSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CHMP1AQ9HD42 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 HLA-A-201ENST00000376802 1334 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AC018892.3-201ENST00000623986 2499 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 NMUR1-201ENST00000305141 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 KIFC3-207ENST00000543930 3018 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 AC107918.4-201ENST00000641966 3141 ntBASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 RALGDS-201ENST00000372047 3598 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
CHMP1AQ9HD42 ADAM15-202ENST00000355956 2877 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms