Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
PCDH9Q9HC56 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC16■□□□□ 0.15
PCDH9Q9HC56 ACE3P-201ENST00000423435 1973 ntBASIC16■□□□□ 0.15
PCDH9Q9HC56 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC16■□□□□ 0.15
PCDH9Q9HC56 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH9Q9HC56 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
PCDH9Q9HC56 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC16■□□□□ 0.15
PCDH9Q9HC56 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH9Q9HC56 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH9Q9HC56 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC16■□□□□ 0.15
PCDH9Q9HC56 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH9Q9HC56 NUCKS1-201ENST00000367142 6496 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
PCDH9Q9HC56 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 WDR25-204ENST00000554175 2055 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 GPR84-201ENST00000267015 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 MIR770-201ENST00000390219 98 ntBASIC15.99■□□□□ 0.15
PCDH9Q9HC56 UBE2F-202ENST00000409332 1138 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AC074338.1-201ENST00000416825 156 ntBASIC15.99■□□□□ 0.15
PCDH9Q9HC56 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AL512638.1-201ENST00000457493 794 ntBASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AC015910.1-201ENST00000579400 975 ntBASIC15.99■□□□□ 0.15
PCDH9Q9HC56 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 RAB3D-202ENST00000589655 924 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 ERCC1-212ENST00000591636 836 ntTSL 2 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 LMNA-201ENST00000347559 3137 ntTSL 5 BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
PCDH9Q9HC56 MRPS17-201ENST00000285298 1845 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 REXO1L2P-201ENST00000425429 2069 ntBASIC15.98■□□□□ 0.15
PCDH9Q9HC56 ZNF384-202ENST00000355772 2514 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AC009961.1-203ENST00000607836 2520 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 ATP6V1H-202ENST00000359530 2007 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PHF19-203ENST00000419155 3525 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 USP40-206ENST00000443711 628 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AC009477.1-201ENST00000452936 217 ntBASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AC004890.2-204ENST00000481968 304 ntBASIC15.98■□□□□ 0.15
PCDH9Q9HC56 SDHAP3-202ENST00000515467 728 ntBASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 ZNF890P-202ENST00000530367 1156 ntBASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 ANKMY1-203ENST00000373318 2449 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 PWP2-201ENST00000291576 3297 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 MYOZ1-201ENST00000359322 1541 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 KIAA2026-202ENST00000399933 6988 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
PCDH9Q9HC56 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms