Protein–RNA interactions for Protein: Q9BXY4

RSPO3, R-spondin-3, humanhuman

Predicted RBP Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RSPO3Q9BXY4 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 HSPA1B-201ENST00000375650 2521 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 DTX3-202ENST00000548198 3199 ntAPPRIS P3 TSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 MSTO1-201ENST00000245564 2431 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ING5-213ENST00000636051 4199 ntTSL 5 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 F2-201ENST00000311907 2023 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 C20orf166-AS1-203ENST00000475015 2585 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 FTH1-201ENST00000273550 1229 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 HNRNPA3P1-201ENST00000401429 1139 ntBASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 MIR1233-2-201ENST00000408138 82 ntBASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 MIR1233-1-201ENST00000408722 82 ntBASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 HLA-K-203ENST00000430151 1046 ntBASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 HNRNPA3P5-201ENST00000455201 833 ntBASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 FTH1-202ENST00000526640 786 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 DDX19A-202ENST00000417604 1703 ntTSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 NOP14-203ENST00000416614 3538 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 PAF1-201ENST00000221265 2066 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 AL365205.1-204ENST00000359201 2098 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 E2F6-201ENST00000307236 3317 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 ALDOA-203ENST00000395248 2447 ntTSL 5 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 PLAU-202ENST00000446342 2658 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 POLR2E-213ENST00000615234 2831 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
RSPO3Q9BXY4 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 SCAF11-204ENST00000395454 1931 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AC007787.1-201ENST00000588095 1583 ntBASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AL391244.1-206ENST00000447725 1843 ntTSL 5 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 NFYC-205ENST00000372654 1455 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 BIRC5-203ENST00000374948 2446 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 PMM2-201ENST00000268261 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 TMPRSS6-204ENST00000406856 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 XRCC1-201ENST00000262887 2802 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 CLCNKA-201ENST00000331433 2475 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 MIR943-201ENST00000401286 94 ntBASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AC092183.1-201ENST00000469884 875 ntBASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AC016168.1-201ENST00000591422 722 ntTSL 3 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 SRD5A3P1-201ENST00000603021 949 ntBASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AL662799.1-202ENST00000614205 422 ntBASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 PPP1R13L-202ENST00000418234 3118 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 POMT1-204ENST00000402686 3038 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 EFHC1-212ENST00000635984 3293 ntTSL 5 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 AC027601.5-201ENST00000624065 2482 ntBASIC14.13□□□□□ -0.15
RSPO3Q9BXY4 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 EGOT-201ENST00000414938 1464 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 AC104758.3-201ENST00000563349 1453 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 CDCA7-202ENST00000347703 2500 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 C21orf58-202ENST00000397679 2900 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 PNMA1-201ENST00000316836 2590 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RSPO3Q9BXY4 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms