Protein–RNA interactions for Protein: Q8IYX3

CCDC116, Coiled-coil domain-containing protein 116, humanhuman

Predictions only

Length 515 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC116Q8IYX3 NPHP3-AS1-201ENST00000489343 2957 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC116Q8IYX3 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC116Q8IYX3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14.64□□□□□ -0.07
CCDC116Q8IYX3 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC116Q8IYX3 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC116Q8IYX3 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC14.64□□□□□ -0.07
CCDC116Q8IYX3 CYP2AB1P-202ENST00000454440 1456 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 FDFT1-224ENST00000618539 2660 ntAPPRIS P1 TSL 5 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 ZNF365-205ENST00000395254 4173 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 AL122018.1-201ENST00000446607 2310 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 AC006058.4-201ENST00000624016 1670 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 PNPO-202ENST00000434554 1196 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 KRT18P43-201ENST00000469825 1281 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 CYMP-203ENST00000474680 1263 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 SPDYE18-201ENST00000510091 1050 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 AC092337.1-201ENST00000568699 1129 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 MIR3908-201ENST00000579798 126 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 OR13I1P-201ENST00000609811 1264 ntBASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 DUSP22-202ENST00000419235 3098 ntAPPRIS P1 TSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 PCSK2-205ENST00000536609 2275 ntTSL 2 BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 HARS-205ENST00000457527 1896 ntTSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.63□□□□□ -0.07
CCDC116Q8IYX3 GARS-201ENST00000389266 2634 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 TNRC18P2-201ENST00000417666 2714 ntBASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 AL096814.1-202ENST00000372963 647 ntAPPRIS P5 TSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 MRPS18AP1-201ENST00000414458 589 ntBASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 AL589987.1-201ENST00000453380 819 ntBASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 MEIS3P1-201ENST00000495167 958 ntBASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 CXCL6-203ENST00000515050 557 ntAPPRIS ALT1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 ERGIC1-212ENST00000523291 586 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 AC012615.6-204ENST00000587741 477 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 SRD5A3P1-201ENST00000603021 949 ntBASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 ENDOV-204ENST00000518137 2815 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 KAT5-202ENST00000352980 2059 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC14.62□□□□□ -0.07
CCDC116Q8IYX3 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC116Q8IYX3 DDTL-201ENST00000215770 1545 ntAPPRIS P1 TSL 2 BASIC14.61□□□□□ -0.07
CCDC116Q8IYX3 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC116Q8IYX3 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC116Q8IYX3 PCYOX1-201ENST00000264441 2959 ntTSL 5 BASIC14.61□□□□□ -0.07
CCDC116Q8IYX3 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
CCDC116Q8IYX3 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.61□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms