Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 RALGPS1-201ENST00000259351 6336 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 CALB1-201ENST00000265431 2533 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 CYTH1-203ENST00000585509 3315 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 PDLIM2-201ENST00000265810 4592 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 AC010536.1-201ENST00000538868 2611 ntBASIC9.58□□□□□ -0.88
LINC00643Q86TS7 RNF43-205ENST00000581868 2610 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SHANK2-203ENST00000409161 9208 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 TJAP1-201ENST00000259751 2720 ntAPPRIS P1 TSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ST5-256ENST00000534127 4545 ntAPPRIS P4 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SRRM4-201ENST00000267260 8477 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 PDHA1-212ENST00000540249 3277 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 CTNNB1-201ENST00000349496 3737 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 DRD2-210ENST00000544518 2473 ntAPPRIS ALT1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZNF397-204ENST00000585800 2046 ntTSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ARFIP2-210ENST00000614314 3846 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 AC007614.5-201ENST00000623424 8892 ntBASIC9.58□□□□□ -0.88
LINC00643Q86TS7 KNDC1-202ENST00000368571 3925 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 ZBTB7B-203ENST00000417934 4017 ntAPPRIS ALT2 TSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SETD1B-204ENST00000619791 5901 ntAPPRIS ALT2 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 DUOXA1-205ENST00000558422 1678 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 DQX1-202ENST00000404568 2689 ntAPPRIS P1 TSL 5 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC9.58□□□□□ -0.88
LINC00643Q86TS7 PIP4K2A-201ENST00000323883 1319 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 LENG8-201ENST00000326764 3991 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ADAT1-201ENST00000307921 1869 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 CCT3-211ENST00000472765 1858 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 PARD6B-201ENST00000371610 4615 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 WDFY2-203ENST00000612477 6932 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 PTCHD3-201ENST00000438700 2529 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 STARD13-202ENST00000336934 5917 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 PACSIN1-207ENST00000620693 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TRMT1L-201ENST00000367506 4392 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TRAF3IP3-204ENST00000367026 2058 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TOMM34-201ENST00000372813 2062 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ZC2HC1A-201ENST00000263849 3352 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 EML4-203ENST00000402711 3568 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ABCC6P1-201ENST00000546162 2943 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 DHX30-215ENST00000619982 3574 ntAPPRIS ALT1 TSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 MAMDC4-201ENST00000317446 3658 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AMER1-202ENST00000374869 3688 ntTSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC145098.2-201ENST00000623593 3026 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 KCND1-201ENST00000218176 4437 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC127496.1-201ENST00000576234 3133 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 LILRB1-203ENST00000396317 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 WDR53-204ENST00000433160 887 ntTSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 PVRIG2P-201ENST00000435460 978 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ZNF148-206ENST00000485866 2960 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC026271.3-201ENST00000571884 352 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 HSD17B1P1-201ENST00000590052 955 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 DNM1-213ENST00000628346 3835 ntAPPRIS ALT1 TSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 LINC01019-201ENST00000505443 3199 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 KCNJ5-203ENST00000533599 1350 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 INIP-203ENST00000374242 4233 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 KRT89P-201ENST00000620027 1478 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 IRAK1BP1-201ENST00000369940 5656 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 BAIAP3-203ENST00000421665 3875 ntTSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 CCDC86-201ENST00000227520 1893 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 RABL2A-206ENST00000409842 1979 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 TMEM104-204ENST00000582330 4679 ntAPPRIS P1 TSL 2 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 SLC4A1-201ENST00000262418 4965 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 SUPT7L-203ENST00000405491 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC018445.4-201ENST00000624066 2291 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 MTHFR-205ENST00000376592 8378 ntAPPRIS P3 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 PID1-204ENST00000409462 2387 ntTSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 AC027020.2-201ENST00000602585 2389 ntBASIC9.57□□□□□ -0.88
LINC00643Q86TS7 ZNF606-201ENST00000341164 4248 ntAPPRIS P1 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 DGKZ-216ENST00000528615 2692 ntTSL 5 BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 MAN2B2-201ENST00000285599 5143 ntAPPRIS P2 TSL 1 (best) BASIC9.57□□□□□ -0.88
LINC00643Q86TS7 VWA5B2-201ENST00000273794 3486 ntTSL 2 BASIC9.57□□□□□ -0.88
Retrieved 100 of 98,524 protein–RNA pairs in 45 ms