Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 PIAS4-201ENST00000262971 3159 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 KRT8P4-201ENST00000509735 1454 ntBASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 NIPAL2-201ENST00000341166 4581 ntTSL 2 BASIC17.88■□□□□ 0.45
SHROOM1Q2M3G4 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 NMNAT3-203ENST00000413939 1711 ntTSL 2 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 TVP23C-210ENST00000584811 2989 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 LMO4-201ENST00000370542 1260 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 MIR663B-201ENST00000408361 115 ntBASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 AC106820.3-201ENST00000561653 397 ntBASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 FXYD6-217ENST00000584394 669 ntTSL 3 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 PAUPAR-201ENST00000630360 2965 ntBASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 NIPA2-204ENST00000398014 3130 ntAPPRIS P1 TSL 5 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 COPS7B-224ENST00000620578 2500 ntTSL 2 BASIC17.87■□□□□ 0.45
SHROOM1Q2M3G4 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 MGAT4B-202ENST00000337755 3027 ntTSL 2 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 MAN1C1-203ENST00000374332 4641 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 MAN1C1-208ENST00000611903 4647 ntTSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 OCEL1-201ENST00000215061 1133 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 CALCA-201ENST00000331587 843 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 AL645937.2-201ENST00000396808 931 ntBASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 AC104457.1-201ENST00000401024 814 ntBASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 MCFD2-204ENST00000409207 1113 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 RGS5-214ENST00000429865 754 ntTSL 3 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 HIST2H2BB-201ENST00000449108 381 ntBASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 IGHJ2P-201ENST00000454480 60 ntBASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 AL133523.1-201ENST00000554537 331 ntTSL 3 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 AC110285.3-201ENST00000574472 665 ntTSL 3 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 AC068587.10-201ENST00000641210 219 ntBASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 CTSD-211ENST00000637387 1597 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 INE2-201ENST00000630399 1874 ntBASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.86■□□□□ 0.45
SHROOM1Q2M3G4 AC141586.1-201ENST00000399702 2748 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 EIF3G-201ENST00000253108 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 UBXN1-202ENST00000301935 1153 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 HNRNPA1P32-201ENST00000396326 963 ntBASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 CBX3-203ENST00000409747 1717 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 TMEM169-204ENST00000437356 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 AL109910.1-201ENST00000452071 1330 ntTSL 2 BASIC17.85■□□□□ 0.45
SHROOM1Q2M3G4 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC17.85■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 57.7 ms