Protein–RNA interactions for Protein: P57078

RIPK4, Receptor-interacting serine/threonine-protein kinase 4, humanhuman

Predictions only

Length 832 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RIPK4P57078 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK4P57078 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.16■□□□□ 0.82
RIPK4P57078 KRBOX4-206ENST00000478600 730 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RIPK4P57078 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK4P57078 HILS1-202ENST00000545329 423 ntBASIC20.16■□□□□ 0.82
RIPK4P57078 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
RIPK4P57078 COX6B1-204ENST00000592141 660 ntAPPRIS P1 TSL 3 BASIC20.16■□□□□ 0.82
RIPK4P57078 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC20.16■□□□□ 0.82
RIPK4P57078 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK4P57078 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC20.16■□□□□ 0.82
RIPK4P57078 SLC9A7P1-201ENST00000554295 3311 ntBASIC20.16■□□□□ 0.82
RIPK4P57078 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC20.16■□□□□ 0.82
RIPK4P57078 ZBTB45P1-201ENST00000452761 1456 ntBASIC20.16■□□□□ 0.82
RIPK4P57078 LTBP2-205ENST00000556690 5614 ntAPPRIS ALT2 TSL 5 BASIC20.16■□□□□ 0.82
RIPK4P57078 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC20.16■□□□□ 0.82
RIPK4P57078 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
RIPK4P57078 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK4P57078 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
RIPK4P57078 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 MYB-242ENST00000618728 3545 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 NUDT16P1-202ENST00000499077 2208 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 SLC9A7P1-202ENST00000556476 2239 ntBASIC20.15■□□□□ 0.82
RIPK4P57078 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 ZSWIM8-213ENST00000603114 5919 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 AC138035.3-201ENST00000622706 2791 ntBASIC20.15■□□□□ 0.82
RIPK4P57078 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC20.15■□□□□ 0.82
RIPK4P57078 GK-202ENST00000378941 458 ntTSL 3 BASIC20.15■□□□□ 0.82
RIPK4P57078 AC005229.1-201ENST00000392885 409 ntBASIC20.15■□□□□ 0.82
RIPK4P57078 KLF2P2-201ENST00000416807 1039 ntBASIC20.15■□□□□ 0.82
RIPK4P57078 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC20.15■□□□□ 0.82
RIPK4P57078 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC20.15■□□□□ 0.82
RIPK4P57078 AC106760.1-201ENST00000508690 800 ntBASIC20.15■□□□□ 0.82
RIPK4P57078 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC20.15■□□□□ 0.82
RIPK4P57078 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 AC126365.1-201ENST00000578585 1514 ntBASIC20.15■□□□□ 0.82
RIPK4P57078 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
RIPK4P57078 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
RIPK4P57078 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
RIPK4P57078 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC20.14■□□□□ 0.82
RIPK4P57078 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC20.14■□□□□ 0.82
RIPK4P57078 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 TGFB1I1-202ENST00000394858 1803 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 RHD-206ENST00000423810 1637 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 TEAD4-203ENST00000397122 1396 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.14■□□□□ 0.81
RIPK4P57078 AC092933.1-201ENST00000393644 945 ntBASIC20.14■□□□□ 0.81
RIPK4P57078 PGGT1BP2-201ENST00000398621 1028 ntBASIC20.14■□□□□ 0.81
RIPK4P57078 NUS1P3-201ENST00000423502 862 ntBASIC20.14■□□□□ 0.81
RIPK4P57078 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 AC114812.1-204ENST00000449669 728 ntBASIC20.14■□□□□ 0.81
RIPK4P57078 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 PUDP-206ENST00000540122 825 ntTSL 2 BASIC20.14■□□□□ 0.81
RIPK4P57078 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 AL512343.1-201ENST00000605837 169 ntBASIC20.14■□□□□ 0.81
RIPK4P57078 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 SH3RF1-201ENST00000284637 5272 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
RIPK4P57078 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC20.14■□□□□ 0.81
RIPK4P57078 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC20.14■□□□□ 0.81
RIPK4P57078 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
RIPK4P57078 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms