Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 GJD2-201ENST00000290374 2889 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 TOM1L2-205ENST00000478943 2098 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 AC254562.1-201ENST00000417586 456 ntBASIC14.98□□□□□ -0.01
FOXA1P55317 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.98□□□□□ -0.01
FOXA1P55317 SERBP1P3-201ENST00000459980 809 ntBASIC14.98□□□□□ -0.01
FOXA1P55317 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA1P55317 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
FOXA1P55317 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 TBCB-211ENST00000589996 724 ntTSL 3 BASIC14.98□□□□□ -0.01
FOXA1P55317 TEX28P1-201ENST00000613479 1221 ntBASIC14.98□□□□□ -0.01
FOXA1P55317 TEX28P2-201ENST00000617764 1221 ntBASIC14.98□□□□□ -0.01
FOXA1P55317 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC14.98□□□□□ -0.01
FOXA1P55317 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC14.98□□□□□ -0.01
FOXA1P55317 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.98□□□□□ -0.01
FOXA1P55317 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 C19orf57-201ENST00000346736 2489 ntAPPRIS P2 TSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA1P55317 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.98□□□□□ -0.01
FOXA1P55317 ZNF32-AS3-201ENST00000458063 1932 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC14.98□□□□□ -0.01
FOXA1P55317 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC14.98□□□□□ -0.01
FOXA1P55317 AL121723.1-201ENST00000445194 1519 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 MICAL1-201ENST00000358577 3142 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 RIOX2-202ENST00000360258 2232 ntAPPRIS P3 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 FRMD5-202ENST00000417257 5011 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 AC097359.2-201ENST00000604992 2389 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 CYP4F11-202ENST00000326742 2877 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 PDE1B-207ENST00000550620 2150 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 HM13-201ENST00000335574 1809 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 SLAIN1-216ENST00000488699 1461 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 ADAM33-206ENST00000617732 1971 ntTSL 5 BASIC14.97□□□□□ -0.01
FOXA1P55317 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 ZC3HAV1-204ENST00000471652 3182 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 INTS4P1-203ENST00000641008 3683 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
FOXA1P55317 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC14.97□□□□□ -0.01
FOXA1P55317 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 AP006288.1-201ENST00000446065 395 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 PFN2-205ENST00000461868 613 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC14.97□□□□□ -0.01
FOXA1P55317 DAD1-205ENST00000543337 501 ntTSL 3 BASIC14.97□□□□□ -0.01
FOXA1P55317 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.97□□□□□ -0.01
FOXA1P55317 AC010336.2-201ENST00000564226 506 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC14.97□□□□□ -0.01
FOXA1P55317 AL138828.2-201ENST00000615812 383 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 AC134684.3-201ENST00000641758 218 ntBASIC14.97□□□□□ -0.01
FOXA1P55317 CDKN2AIP-201ENST00000302350 2646 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 C5orf38-207ENST00000515640 1441 ntAPPRIS ALT2 TSL 3 BASIC14.97□□□□□ -0.01
FOXA1P55317 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC14.97□□□□□ -0.01
FOXA1P55317 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 SEMA5B-201ENST00000195173 4523 ntAPPRIS ALT2 TSL 5 BASIC14.97□□□□□ -0.01
FOXA1P55317 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC14.97□□□□□ -0.01
FOXA1P55317 LINC01184-204ENST00000501702 2977 ntTSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.97□□□□□ -0.01
FOXA1P55317 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC14.97□□□□□ -0.01
FOXA1P55317 NEK11-205ENST00000507910 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 LHCGR-202ENST00000401907 1477 ntTSL 5 BASIC14.96□□□□□ -0.01
FOXA1P55317 CYB561D1-204ENST00000420578 3326 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
FOXA1P55317 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
Retrieved 100 of 98,524 protein–RNA pairs in 63.9 ms