Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 RER1-203ENST00000378513 3000 ntTSL 3 BASIC16.12■□□□□ 0.17
CDH6P55285 MROH4P-201ENST00000431302 1578 ntBASIC16.12■□□□□ 0.17
CDH6P55285 RNF183-201ENST00000297894 1830 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
CDH6P55285 MIR600HG-201ENST00000449175 5984 ntBASIC16.12■□□□□ 0.17
CDH6P55285 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
CDH6P55285 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH6P55285 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC16.12■□□□□ 0.17
CDH6P55285 STAMBPL1-204ENST00000371927 4184 ntTSL 2 BASIC16.12■□□□□ 0.17
CDH6P55285 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
CDH6P55285 ZNF586-203ENST00000396154 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 LINC00528-201ENST00000600723 2160 ntBASIC16.11■□□□□ 0.17
CDH6P55285 IL9R-201ENST00000244174 1944 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 PER2-201ENST00000254657 6385 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 C14orf180-203ENST00000557649 2551 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 MYO15B-237ENST00000642007 4893 ntBASIC16.11■□□□□ 0.17
CDH6P55285 BLMH-201ENST00000261714 2365 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC16.11■□□□□ 0.17
CDH6P55285 FAM8A3P-201ENST00000427218 844 ntBASIC16.11■□□□□ 0.17
CDH6P55285 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 AC004890.2-204ENST00000481968 304 ntBASIC16.11■□□□□ 0.17
CDH6P55285 STOM-203ENST00000538954 1257 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH6P55285 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC16.11■□□□□ 0.17
CDH6P55285 PRR29-204ENST00000577953 565 ntTSL 4 BASIC16.11■□□□□ 0.17
CDH6P55285 AC005498.2-205ENST00000593218 784 ntBASIC16.11■□□□□ 0.17
CDH6P55285 AC008738.7-201ENST00000609744 511 ntBASIC16.11■□□□□ 0.17
CDH6P55285 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 TMEM179-205ENST00000615704 636 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 AC022144.1-201ENST00000602255 1580 ntBASIC16.11■□□□□ 0.17
CDH6P55285 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
CDH6P55285 PODN-201ENST00000312553 3010 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.11■□□□□ 0.17
CDH6P55285 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 PI4K2B-201ENST00000264864 3540 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
CDH6P55285 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
CDH6P55285 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 BPIFB2-201ENST00000170150 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC16.1■□□□□ 0.17
CDH6P55285 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CDH6P55285 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 PKIG-203ENST00000372887 769 ntTSL 3 BASIC16.1■□□□□ 0.17
CDH6P55285 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH6P55285 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.1■□□□□ 0.17
CDH6P55285 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 AL512638.1-201ENST00000457493 794 ntBASIC16.1■□□□□ 0.17
CDH6P55285 SPDYE18-201ENST00000510091 1050 ntBASIC16.1■□□□□ 0.17
CDH6P55285 AC093214.1-201ENST00000511688 1107 ntBASIC16.1■□□□□ 0.17
CDH6P55285 AC135586.1-201ENST00000539323 574 ntBASIC16.1■□□□□ 0.17
CDH6P55285 AC027796.2-201ENST00000575326 344 ntBASIC16.1■□□□□ 0.17
CDH6P55285 AC004840.1-201ENST00000636359 365 ntBASIC16.1■□□□□ 0.17
CDH6P55285 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.1■□□□□ 0.17
CDH6P55285 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 PDE8B-202ENST00000333194 2572 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 RIMS3-202ENST00000372684 7235 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
CDH6P55285 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
CDH6P55285 RAB3IP-204ENST00000378815 2386 ntTSL 2 BASIC16.09■□□□□ 0.17
CDH6P55285 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC16.09■□□□□ 0.17
CDH6P55285 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
CDH6P55285 KCNMA1-219ENST00000480683 2963 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms