Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 IKZF1-217ENST00000612658 962 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VCPP55072 SNX1-214ENST00000625244 324 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 ATRNL1-201ENST00000355044 8479 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 GDPD3-202ENST00000406256 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 GSN-206ENST00000394353 2311 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 HSPA4L-204ENST00000508776 3020 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VCPP55072 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 ACSL3-201ENST00000357430 5679 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
VCPP55072 TRIP10-210ENST00000600428 2249 ntTSL 5 BASIC16.58■□□□□ 0.25
VCPP55072 NOMO2-203ENST00000543392 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCPP55072 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCPP55072 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCPP55072 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VCPP55072 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
VCPP55072 ING5-213ENST00000636051 4199 ntTSL 5 BASIC16.58■□□□□ 0.25
VCPP55072 GTF3C4-201ENST00000372146 9043 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC16.58■□□□□ 0.24
VCPP55072 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.58■□□□□ 0.24
VCPP55072 SLC25A24P2-201ENST00000415059 510 ntBASIC16.58■□□□□ 0.24
VCPP55072 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.58■□□□□ 0.24
VCPP55072 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.58■□□□□ 0.24
VCPP55072 IGHJ2P-201ENST00000454480 60 ntBASIC16.58■□□□□ 0.24
VCPP55072 FO681548.1-201ENST00000455617 1132 ntBASIC16.58■□□□□ 0.24
VCPP55072 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC16.58■□□□□ 0.24
VCPP55072 APRT-204ENST00000563655 709 ntTSL 5 BASIC16.58■□□□□ 0.24
VCPP55072 RRP7BP-205ENST00000566851 833 ntBASIC16.58■□□□□ 0.24
VCPP55072 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC16.58■□□□□ 0.24
VCPP55072 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.24
VCPP55072 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC16.58■□□□□ 0.24
VCPP55072 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 LRRFIP1P1-201ENST00000498774 2246 ntBASIC16.58■□□□□ 0.24
VCPP55072 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC16.58■□□□□ 0.24
VCPP55072 RPS19-206ENST00000598742 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 RFK-201ENST00000376736 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 ARFGAP2-202ENST00000426335 2937 ntTSL 2 BASIC16.58■□□□□ 0.24
VCPP55072 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.24
VCPP55072 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
VCPP55072 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC16.58■□□□□ 0.24
VCPP55072 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 NPHP3-201ENST00000337331 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 PLEKHA8-205ENST00000449726 7835 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCPP55072 NFAM1-201ENST00000329021 5602 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
VCPP55072 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC16.57■□□□□ 0.24
VCPP55072 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC16.57■□□□□ 0.24
VCPP55072 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 AC105250.1-201ENST00000509378 2057 ntBASIC16.57■□□□□ 0.24
VCPP55072 AC023157.3-201ENST00000619086 2088 ntBASIC16.57■□□□□ 0.24
VCPP55072 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
VCPP55072 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 AC087481.3-201ENST00000602886 1894 ntBASIC16.57■□□□□ 0.24
VCPP55072 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
VCPP55072 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 AL162742.1-201ENST00000434792 954 ntTSL 2 BASIC16.57■□□□□ 0.24
VCPP55072 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC16.57■□□□□ 0.24
VCPP55072 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.57■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 450.8 ms