Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 AC100757.3-201ENST00000622361 1406 ntBASIC14.61□□□□□ -0.07
RFX3P48380 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.61□□□□□ -0.07
RFX3P48380 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC14.61□□□□□ -0.07
RFX3P48380 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC14.61□□□□□ -0.07
RFX3P48380 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 AC093214.1-201ENST00000511688 1107 ntBASIC14.61□□□□□ -0.07
RFX3P48380 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC14.61□□□□□ -0.07
RFX3P48380 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC14.61□□□□□ -0.07
RFX3P48380 AC097359.3-201ENST00000603982 1210 ntBASIC14.61□□□□□ -0.07
RFX3P48380 AL158211.3-201ENST00000607385 239 ntBASIC14.61□□□□□ -0.07
RFX3P48380 AL109936.8-201ENST00000641772 604 ntBASIC14.61□□□□□ -0.07
RFX3P48380 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 PDPK1-201ENST00000268673 4728 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 RAPSN-202ENST00000352508 1452 ntTSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 ATP2B3-201ENST00000263519 6420 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 RAD51C-215ENST00000583539 1319 ntAPPRIS ALT2 TSL 2 BASIC14.61□□□□□ -0.07
RFX3P48380 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC14.61□□□□□ -0.07
RFX3P48380 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC14.61□□□□□ -0.07
RFX3P48380 TRAK1-203ENST00000396175 5033 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 PPM1J-202ENST00000464951 2474 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 SLC39A8-202ENST00000394833 3238 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.6□□□□□ -0.07
RFX3P48380 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 ASAP1-202ENST00000518721 5507 ntAPPRIS P3 TSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 RP1L1-202ENST00000382483 7973 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 NBPF26-208ENST00000620612 4602 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 SLC12A5-211ENST00000616933 6166 ntTSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 ANKRD23-201ENST00000318357 2597 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 SLC34A1-201ENST00000324417 2573 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 KDR-201ENST00000263923 5831 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 DUPD1-201ENST00000338487 663 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
RFX3P48380 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC14.6□□□□□ -0.07
RFX3P48380 TARDBPP1-201ENST00000442013 1203 ntBASIC14.6□□□□□ -0.07
RFX3P48380 AL512638.1-201ENST00000457493 794 ntBASIC14.6□□□□□ -0.07
RFX3P48380 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.6□□□□□ -0.07
RFX3P48380 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.6□□□□□ -0.07
RFX3P48380 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC14.6□□□□□ -0.07
RFX3P48380 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC14.6□□□□□ -0.07
RFX3P48380 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC14.6□□□□□ -0.07
RFX3P48380 CLN3-255ENST00000637100 1284 ntTSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 C1R-202ENST00000536053 2347 ntTSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC14.6□□□□□ -0.07
RFX3P48380 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
RFX3P48380 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
RFX3P48380 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC14.6□□□□□ -0.07
RFX3P48380 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms