Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PBDC1-201ENST00000373357 977 ntTSL 2 BASIC14.5□□□□□ -0.09
COL5A1P20908 AC098935.1-201ENST00000446057 611 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC14.5□□□□□ -0.09
COL5A1P20908 AC117500.3-201ENST00000537032 666 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 DUX4L46-201ENST00000566845 751 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 SNORD3B-2-202ENST00000571722 791 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 AC051619.9-201ENST00000623237 597 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
COL5A1P20908 AC112693.3-201ENST00000624819 1983 ntBASIC14.5□□□□□ -0.09
COL5A1P20908 MVK-214ENST00000629016 1591 ntTSL 5 BASIC14.5□□□□□ -0.09
COL5A1P20908 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 AL138725.1-201ENST00000407347 1314 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 PSME3-202ENST00000441946 2944 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC14.49□□□□□ -0.09
COL5A1P20908 UBL7-201ENST00000361351 1360 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL5A1P20908 AC011840.2-201ENST00000563063 1520 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 FLJ31104-201ENST00000500093 2289 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 TSPO2-201ENST00000373158 718 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 STX1A-202ENST00000395154 1022 ntTSL 3 BASIC14.49□□□□□ -0.09
COL5A1P20908 AC131097.3-203ENST00000420272 1193 ntTSL 5 BASIC14.49□□□□□ -0.09
COL5A1P20908 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 FKBP2-203ENST00000449942 613 ntAPPRIS P1 TSL 5 BASIC14.49□□□□□ -0.09
COL5A1P20908 AC073150.1-201ENST00000450406 1084 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC14.49□□□□□ -0.09
COL5A1P20908 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC14.49□□□□□ -0.09
COL5A1P20908 AC090857.1-201ENST00000527400 390 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 TMCO5B-204ENST00000529696 1568 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 SAP25-201ENST00000538735 837 ntAPPRIS P2 TSL 3 BASIC14.49□□□□□ -0.09
COL5A1P20908 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 ESRRB-207ENST00000556177 1427 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 AP000894.2-204ENST00000577358 473 ntTSL 5 BASIC14.49□□□□□ -0.09
COL5A1P20908 AC012044.1-201ENST00000603431 297 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 AC011491.1-203ENST00000637688 543 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.49□□□□□ -0.09
COL5A1P20908 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
COL5A1P20908 AC244394.1-201ENST00000435000 1665 ntBASIC14.49□□□□□ -0.09
COL5A1P20908 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC14.49□□□□□ -0.09
COL5A1P20908 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 MAGEA1-201ENST00000356661 1710 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 LENEP-202ENST00000392487 555 ntAPPRIS P1 BASIC14.48□□□□□ -0.09
COL5A1P20908 CALCA-203ENST00000396372 581 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 AL590617.2-201ENST00000432673 917 ntTSL 3 BASIC14.48□□□□□ -0.09
COL5A1P20908 IGLV3-15-201ENST00000518356 244 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC14.48□□□□□ -0.09
COL5A1P20908 RTN3P1-201ENST00000536295 711 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 AL645941.3-201ENST00000580587 577 ntTSL 4 BASIC14.48□□□□□ -0.09
COL5A1P20908 RN7SL736P-201ENST00000613111 269 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 NAP1L6-202ENST00000641404 1222 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 KRT8P21-201ENST00000430398 1491 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 ZBTB45P1-201ENST00000452761 1456 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 PPT1-215ENST00000641471 2368 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 AC009093.2-202ENST00000620513 2079 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 FAM90A7P-201ENST00000382628 1395 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 FAM90A23P-201ENST00000400136 1395 ntBASIC14.48□□□□□ -0.09
COL5A1P20908 ALPL-207ENST00000540617 2131 ntAPPRIS ALT2 TSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 PTOV1-214ENST00000600603 1443 ntTSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
COL5A1P20908 COPS3-201ENST00000268717 1641 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
COL5A1P20908 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC14.48□□□□□ -0.09
COL5A1P20908 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.48□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms