Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 CLK3P2-201ENST00000427566 1453 ntBASIC15.43■□□□□ 0.06
MSH3P20585 AC084364.1-201ENST00000551967 1556 ntBASIC15.43■□□□□ 0.06
MSH3P20585 TP73-209ENST00000603362 1668 ntTSL 5 BASIC15.43■□□□□ 0.06
MSH3P20585 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 PDE4A-203ENST00000380702 4781 ntAPPRIS P4 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 ZNF19-208ENST00000565637 2612 ntTSL 2 BASIC15.43■□□□□ 0.06
MSH3P20585 ICAM3-201ENST00000160262 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC15.43■□□□□ 0.06
MSH3P20585 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.43■□□□□ 0.06
MSH3P20585 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.43■□□□□ 0.06
MSH3P20585 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 IL6ST-209ENST00000502326 3007 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 NPHP4-211ENST00000622020 3004 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 PAK6-203ENST00000542403 2540 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
MSH3P20585 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 AL161785.3-201ENST00000435157 395 ntTSL 3 BASIC15.42■□□□□ 0.06
MSH3P20585 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC15.42■□□□□ 0.06
MSH3P20585 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC15.42■□□□□ 0.06
MSH3P20585 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 FAM86LP-201ENST00000478302 853 ntBASIC15.42■□□□□ 0.06
MSH3P20585 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 AC000095.1-201ENST00000603208 874 ntBASIC15.42■□□□□ 0.06
MSH3P20585 AC099568.2-201ENST00000609194 695 ntBASIC15.42■□□□□ 0.06
MSH3P20585 AL391069.4-201ENST00000609583 481 ntBASIC15.42■□□□□ 0.06
MSH3P20585 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.42■□□□□ 0.06
MSH3P20585 GRIN3A-201ENST00000361820 7770 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 ZNF208-205ENST00000601773 2027 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 ELMO3-201ENST00000360833 2480 ntAPPRIS ALT2 TSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 AMT-224ENST00000635808 1610 ntTSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
MSH3P20585 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC15.42■□□□□ 0.06
MSH3P20585 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.42■□□□□ 0.06
MSH3P20585 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 KDM3A-203ENST00000409556 4928 ntAPPRIS P1 TSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC15.41■□□□□ 0.06
MSH3P20585 RPL5P21-201ENST00000404620 815 ntBASIC15.41■□□□□ 0.06
MSH3P20585 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 FADS2-205ENST00000517839 469 ntTSL 3 BASIC15.41■□□□□ 0.06
MSH3P20585 AC190387.1-201ENST00000551683 408 ntBASIC15.41■□□□□ 0.06
MSH3P20585 COX11-202ENST00000571584 1108 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 AC093726.1-201ENST00000608064 963 ntBASIC15.41■□□□□ 0.06
MSH3P20585 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 FOSL2-201ENST00000264716 6708 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 TLE3-202ENST00000440567 2657 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 LEMD3-201ENST00000308330 4764 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 ASAH1-249ENST00000637528 2215 ntTSL 5 BASIC15.41■□□□□ 0.06
MSH3P20585 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC15.41■□□□□ 0.06
MSH3P20585 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
MSH3P20585 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms