Protein–RNA interactions for Protein: P12110

COL6A2, Collagen alpha-2(VI) chain, humanhuman

Predictions only

Length 1,019 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A2P12110 AL157832.3-201ENST00000635764 1005 ntTSL 5 BASIC15.32■□□□□ 0.04
COL6A2P12110 AL033527.5-202ENST00000641632 1098 ntBASIC15.32■□□□□ 0.04
COL6A2P12110 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC15.32■□□□□ 0.04
COL6A2P12110 DDB1-201ENST00000301764 4506 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A2P12110 TTC6-206ENST00000553443 5833 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL6A2P12110 TBXAS1-208ENST00000448866 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A2P12110 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A2P12110 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A2P12110 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.32■□□□□ 0.04
COL6A2P12110 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL6A2P12110 CETN4P-206ENST00000642099 2168 ntBASIC15.32■□□□□ 0.04
COL6A2P12110 ATP6V1H-201ENST00000355221 2365 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A2P12110 FP565260.6-204ENST00000620528 1640 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
COL6A2P12110 USP35-203ENST00000529308 4216 ntAPPRIS P1 TSL 5 BASIC15.32■□□□□ 0.04
COL6A2P12110 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 PIMREG-205ENST00000572447 1948 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 CLCN1-201ENST00000343257 3172 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC15.31■□□□□ 0.04
COL6A2P12110 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 TOMM22P5-201ENST00000416399 439 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 AC015922.1-201ENST00000421102 1152 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 AL513327.2-201ENST00000432703 490 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC15.31■□□□□ 0.04
COL6A2P12110 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 AC025048.3-201ENST00000590609 569 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 AL589739.1-201ENST00000607720 493 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 AC005702.4-201ENST00000618393 416 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 TMCO3-207ENST00000474393 2843 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 CEP76-201ENST00000262127 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 ZBTB45P1-201ENST00000452761 1456 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 LCOR-202ENST00000356016 4834 ntAPPRIS P3 TSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 GRAMD4P3-201ENST00000621665 1669 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 PSD-209ENST00000611678 3382 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 SLC18A2-201ENST00000298472 3852 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 HVCN1-202ENST00000356742 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
COL6A2P12110 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC15.31■□□□□ 0.04
COL6A2P12110 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.31■□□□□ 0.04
COL6A2P12110 AC005912.2-201ENST00000619492 2400 ntBASIC15.31■□□□□ 0.04
COL6A2P12110 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 LINC02395-201ENST00000546821 3157 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 MYO15B-237ENST00000642007 4893 ntBASIC15.3■□□□□ 0.04
COL6A2P12110 MLST8-201ENST00000301724 1735 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 THEMIS2-203ENST00000373925 1650 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 ZBTB17-201ENST00000375733 2770 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.3■□□□□ 0.04
COL6A2P12110 AL080243.2-201ENST00000418783 582 ntBASIC15.3■□□□□ 0.04
COL6A2P12110 RPL13P2-201ENST00000440687 659 ntBASIC15.3■□□□□ 0.04
COL6A2P12110 POLR2B-205ENST00000441246 3839 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.3■□□□□ 0.04
COL6A2P12110 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 AP002748.3-201ENST00000527092 828 ntTSL 3 BASIC15.3■□□□□ 0.04
COL6A2P12110 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 CES4A-203ENST00000535696 1472 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 AL512356.2-201ENST00000546955 174 ntBASIC15.3■□□□□ 0.04
COL6A2P12110 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 MAPT-213ENST00000571987 2277 ntAPPRIS P4 TSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.3■□□□□ 0.04
COL6A2P12110 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 RBPJ-205ENST00000355476 5990 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 BHMG1-201ENST00000457052 2749 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 KATNB1-201ENST00000379661 2664 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
COL6A2P12110 PDE3A-201ENST00000359062 7576 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
COL6A2P12110 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
COL6A2P12110 AC140479.7-201ENST00000636301 2332 ntBASIC15.29■□□□□ 0.04
COL6A2P12110 PPP2R5C-204ENST00000422945 4481 ntTSL 2 BASIC15.29■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms