Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.15■□□□□ 0.02
PCNAP12004 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC15.15■□□□□ 0.02
PCNAP12004 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.15■□□□□ 0.02
PCNAP12004 AC073592.8-201ENST00000624126 511 ntBASIC15.15■□□□□ 0.02
PCNAP12004 HADH-212ENST00000638621 741 ntTSL 5 BASIC15.15■□□□□ 0.02
PCNAP12004 AL033527.5-202ENST00000641632 1098 ntBASIC15.15■□□□□ 0.02
PCNAP12004 TRAF7-201ENST00000326181 3700 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC15.15■□□□□ 0.02
PCNAP12004 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 ATP5F1-202ENST00000369722 3156 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC15.15■□□□□ 0.02
PCNAP12004 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 FABP1-202ENST00000393750 1839 ntTSL 2 BASIC15.15■□□□□ 0.02
PCNAP12004 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
PCNAP12004 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC15.15■□□□□ 0.02
PCNAP12004 KRT18P28-201ENST00000453838 1332 ntBASIC15.15■□□□□ 0.02
PCNAP12004 SIGLEC11-202ENST00000426971 2479 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
PCNAP12004 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.15■□□□□ 0.02
PCNAP12004 DSE-202ENST00000359564 4037 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 PRKD2-201ENST00000291281 3070 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 SLC38A10-202ENST00000374759 4300 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
PCNAP12004 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 WRB-204ENST00000398753 699 ntTSL 3 BASIC15.14■□□□□ 0.01
PCNAP12004 HLA-V-204ENST00000476601 1289 ntBASIC15.14■□□□□ 0.01
PCNAP12004 AC067863.1-201ENST00000494933 530 ntBASIC15.14■□□□□ 0.01
PCNAP12004 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 AC027369.6-201ENST00000525520 931 ntBASIC15.14■□□□□ 0.01
PCNAP12004 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC15.14■□□□□ 0.01
PCNAP12004 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.14■□□□□ 0.01
PCNAP12004 TEX28P1-201ENST00000613479 1221 ntBASIC15.14■□□□□ 0.01
PCNAP12004 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 TEX28P2-201ENST00000617764 1221 ntBASIC15.14■□□□□ 0.01
PCNAP12004 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 C18orf15-201ENST00000623680 2534 ntBASIC15.14■□□□□ 0.01
PCNAP12004 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 SYBU-235ENST00000533895 3244 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.14■□□□□ 0.01
PCNAP12004 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC15.14■□□□□ 0.01
PCNAP12004 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
PCNAP12004 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC15.13■□□□□ 0.01
PCNAP12004 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PCNAP12004 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.13■□□□□ 0.01
PCNAP12004 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 SLC52A3-201ENST00000217254 2654 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PCNAP12004 COCH-203ENST00000460581 2688 ntTSL 2 BASIC15.13■□□□□ 0.01
PCNAP12004 SNX30-201ENST00000374232 7622 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
PCNAP12004 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.13■□□□□ 0.01
PCNAP12004 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 HIPK4-201ENST00000291823 2452 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
PCNAP12004 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
PCNAP12004 LBH-203ENST00000404397 543 ntTSL 4 BASIC15.13■□□□□ 0.01
PCNAP12004 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms