Protein–RNA interactions for Protein: P0DP91

CSB-PGBD3, Chimeric ERCC6-PGBD3 protein, humanhuman

Predictions only

Length 1,061 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSB-PGBD3P0DP91 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 DPM3-202ENST00000368399 517 ntBASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 CD8B-204ENST00000393759 1096 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 AL136309.1-201ENST00000403917 691 ntBASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 AC022748.3-201ENST00000621828 275 ntBASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 EWSAT1-206ENST00000558922 1725 ntTSL 5 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC20.29■□□□□ 0.84
CSB-PGBD3P0DP91 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 COMMD4-201ENST00000267935 1067 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 COMMD4-202ENST00000338995 722 ntTSL 2 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 VAMP1-202ENST00000396308 1113 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 GHSR-202ENST00000427970 912 ntBASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 EEF1DP6-201ENST00000449232 372 ntBASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 AP000438.1-201ENST00000543624 749 ntTSL 3 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 COMMD4-211ENST00000564815 639 ntTSL 3 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 AC026740.1-201ENST00000607068 791 ntBASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 MIR7845-201ENST00000618396 99 ntBASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 AC138466.3-201ENST00000619983 221 ntBASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 GAS7-203ENST00000432992 4970 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 TUBGCP2-203ENST00000368563 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 AD000864.1-201ENST00000624076 2295 ntBASIC20.28■□□□□ 0.84
CSB-PGBD3P0DP91 CLUHP2-201ENST00000426660 1303 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 TUBA3D-201ENST00000321253 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 COLEC11-201ENST00000236693 1381 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 MPV17-204ENST00000399052 749 ntTSL 4 BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AC104457.1-201ENST00000401024 814 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AC253536.4-201ENST00000440539 267 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AC012618.1-201ENST00000461223 412 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 MRNIP-220ENST00000523084 1096 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AC013355.1-201ENST00000562625 723 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AL133499.1-201ENST00000596207 608 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AC004466.1-201ENST00000599515 1080 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 AC100757.4-201ENST00000626934 759 ntBASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 CERK-201ENST00000216264 4450 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CSB-PGBD3P0DP91 MPDU1-201ENST00000250124 1601 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC20.27■□□□□ 0.83
CSB-PGBD3P0DP91 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms