Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 BTNL10-201ENST00000595971 695 ntBASIC14.09□□□□□ -0.15
HOXD4P09016 AC133552.6-201ENST00000613406 534 ntBASIC14.09□□□□□ -0.15
HOXD4P09016 ARMC5-203ENST00000457010 4844 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 KIRREL3-202ENST00000525704 2474 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 TJP3-207ENST00000589378 3068 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 NRP2-203ENST00000357785 2926 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 DLX6-202ENST00000518156 2304 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 HNRNPH1-201ENST00000329433 2114 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 TAF1C-216ENST00000566732 2972 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC14.09□□□□□ -0.15
HOXD4P09016 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC14.09□□□□□ -0.15
HOXD4P09016 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 ZFP41-203ENST00000520584 3284 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
HOXD4P09016 HNRNPA1P48-201ENST00000562726 1377 ntBASIC14.09□□□□□ -0.15
HOXD4P09016 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.08□□□□□ -0.15
HOXD4P09016 COL17A1-202ENST00000369733 5488 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
HOXD4P09016 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD4P09016 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD4P09016 AHDC1-202ENST00000374011 6438 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
HOXD4P09016 ZBTB17-202ENST00000375743 2745 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD4P09016 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC14.08□□□□□ -0.15
HOXD4P09016 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.08□□□□□ -0.15
HOXD4P09016 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
HOXD4P09016 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 NPY-201ENST00000242152 585 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 AP000317.2-201ENST00000362077 641 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXD4P09016 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 SUMF2-205ENST00000413756 1171 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 AC074338.1-201ENST00000416825 156 ntBASIC14.08□□□□□ -0.16
HOXD4P09016 LINC01067-201ENST00000432575 664 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXD4P09016 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC14.08□□□□□ -0.16
HOXD4P09016 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXD4P09016 KRT223P-202ENST00000449164 1292 ntBASIC14.08□□□□□ -0.16
HOXD4P09016 AC084864.1-201ENST00000496217 305 ntTSL 3 BASIC14.08□□□□□ -0.16
HOXD4P09016 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 AC010491.1-203ENST00000564167 638 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 SHBG-212ENST00000575314 1146 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 ABBA01031660.1-201ENST00000635219 756 ntBASIC14.08□□□□□ -0.16
HOXD4P09016 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
HOXD4P09016 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 MAP3K12-205ENST00000547488 2807 ntAPPRIS ALT2 TSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC14.08□□□□□ -0.16
HOXD4P09016 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC14.08□□□□□ -0.16
HOXD4P09016 PIDD1-202ENST00000411829 2886 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 NAALADL1-204ENST00000358658 2699 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
HOXD4P09016 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 LMBR1-202ENST00000359422 4727 ntTSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 CABP4-201ENST00000325656 2559 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 PKD2L2-205ENST00000508638 2333 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
HOXD4P09016 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.07□□□□□ -0.16
HOXD4P09016 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
HOXD4P09016 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.07□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms