Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 NEU3-203ENST00000529024 581 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AC000095.1-201ENST00000603208 874 ntBASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AMT-232ENST00000636199 1546 ntTSL 5 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 MRI1-202ENST00000319545 3027 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 DUS2-202ENST00000432752 1864 ntTSL 2 BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 ATP2A2-204ENST00000539276 4094 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
COL4A3BPQ9Y5P4 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 PPFIBP2-201ENST00000299492 3557 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 ITIH1-202ENST00000405128 1122 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 GLI4-203ENST00000517468 963 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 PAM16-204ENST00000571941 674 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 ACTL6A-203ENST00000450518 1750 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 FYN-205ENST00000368682 3234 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL4A3BPQ9Y5P4 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 PHLDA2-201ENST00000314222 955 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 GK-202ENST00000378941 458 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 HNRNPA1P13-201ENST00000510646 963 ntBASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 AL049840.4-201ENST00000602422 811 ntBASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 PLPP3-201ENST00000371250 3292 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 SETD1B-201ENST00000267197 5772 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 PSD-201ENST00000020673 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 MFF-204ENST00000353339 2186 ntTSL 5 BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL4A3BPQ9Y5P4 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms