Protein–RNA interactions for Protein: Q9Y3P4

RHBDD3, Rhomboid domain-containing protein 3, humanhuman

Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RHBDD3Q9Y3P4 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ZFHX2-205ENST00000615307 1972 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AC023024.2-201ENST00000623561 1993 ntBASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 RUNDC1-201ENST00000361677 3828 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 AC245052.4-201ENST00000452097 4158 ntTSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 RALGDS-202ENST00000372050 3634 ntAPPRIS P3 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 SELENON-203ENST00000374315 4212 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 AC007191.1-201ENST00000623179 2995 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 SHROOM1-201ENST00000319854 3190 ntAPPRIS P3 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 NBL1-201ENST00000289749 731 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 NME2-201ENST00000393183 568 ntTSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 MIR1233-2-201ENST00000408138 82 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 MIR1233-1-201ENST00000408722 82 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 SPDYE17-201ENST00000412399 783 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 SPDYE7P-202ENST00000420373 878 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 DNAJB3-202ENST00000449667 1266 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 DAD1-205ENST00000543337 501 ntTSL 3 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 HNRNPUP1-201ENST00000554987 333 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 LINC00628-201ENST00000628516 1289 ntBASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 SRRD-201ENST00000215917 4020 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CYTH3-201ENST00000350796 4505 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CYTH3-202ENST00000396741 4508 ntAPPRIS ALT1 TSL 5 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 RASA3-201ENST00000334062 4191 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PRICKLE1-201ENST00000345127 5902 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 SPRED1-201ENST00000299084 7780 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
RHBDD3Q9Y3P4 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 CEP63-212ENST00000513612 2903 ntAPPRIS P3 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 AP002990.1-202ENST00000496634 5064 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 LINC00552-201ENST00000625151 2579 ntBASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 IMPDH1P4-201ENST00000445028 1534 ntBASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 KANK2-207ENST00000589894 2703 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 ZNF385A-205ENST00000546970 2494 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 MAGEA12-201ENST00000357916 1664 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 AL645939.2-201ENST00000427340 991 ntBASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
RHBDD3Q9Y3P4 AL512356.2-201ENST00000546955 174 ntBASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 33 ms