Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 C1QB-201ENST00000314933 1044 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 MIR1909-201ENST00000411312 80 ntBASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 AP000552.1-208ENST00000452952 576 ntTSL 4 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 AC025279.2-201ENST00000569730 653 ntBASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 MIR4259-201ENST00000584466 101 ntBASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 MIEF2-203ENST00000395704 2879 ntTSL 2 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 LINC00528-201ENST00000600723 2160 ntBASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 SGCE-205ENST00000437425 1508 ntTSL 2 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC19.97■□□□□ 0.79
TRIM35Q9UPQ4 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 UPB1-202ENST00000382760 1928 ntTSL 5 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 AC004466.1-201ENST00000599515 1080 ntBASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 AL022328.1-201ENST00000610050 478 ntBASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 AGAP7P-201ENST00000582299 2062 ntBASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 AGAP14-201ENST00000624701 2060 ntBASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 PDIA3P1-201ENST00000471856 1510 ntBASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 PCED1B-202ENST00000546455 2328 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
TRIM35Q9UPQ4 CCDC51-204ENST00000442740 1554 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 APBB1-219ENST00000608704 2095 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 AL137783.1-201ENST00000623494 1896 ntBASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 CATSPER2P1-203ENST00000429276 1466 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 HGSNAT-207ENST00000521576 2332 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 RPS15-201ENST00000233609 534 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 OR8S1-201ENST00000310194 1080 ntBASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 PES1-204ENST00000402284 2144 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 COPS6-202ENST00000418625 1107 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 C19orf24-202ENST00000469144 668 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 KRT18P25-201ENST00000508931 1278 ntBASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 PUDP-206ENST00000540122 825 ntTSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 RPS15-205ENST00000586686 562 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 RPS15-208ENST00000591804 711 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 RPS15-209ENST00000592588 510 ntAPPRIS P2 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 MIR6775-201ENST00000617557 69 ntBASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 MPC2-202ENST00000367846 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 IQCA1L-203ENST00000615129 2606 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 CAMLG-201ENST00000297156 2221 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 WASH3P-207ENST00000560956 1394 ntBASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC19.95■□□□□ 0.78
TRIM35Q9UPQ4 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC19.94■□□□□ 0.78
TRIM35Q9UPQ4 SCNN1D-205ENST00000379116 3044 ntAPPRIS P2 TSL 5 BASIC19.94■□□□□ 0.78
TRIM35Q9UPQ4 TCP11L1-201ENST00000334274 2817 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM35Q9UPQ4 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC19.94■□□□□ 0.78
TRIM35Q9UPQ4 TSEN2-201ENST00000284995 2381 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
TRIM35Q9UPQ4 CCDC140-201ENST00000295226 1699 ntAPPRIS P2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Retrieved 100 of 98,524 protein–RNA pairs in 54.9 ms