Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AC244669.2-201ENST00000612320 853 ntBASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 CYP2AB1P-202ENST00000454440 1456 ntBASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
TM9SF3Q9HD45 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 MPV17-206ENST00000402722 827 ntTSL 3 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AL139289.2-201ENST00000424948 661 ntTSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 YBX1P6-201ENST00000442962 1002 ntBASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AC026410.3-201ENST00000514280 936 ntBASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 CMC2-214ENST00000565925 640 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AC006453.2-202ENST00000635968 827 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 DIRAS2-201ENST00000375765 4386 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC15.5■□□□□ 0.07
TM9SF3Q9HD45 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AC022532.1-201ENST00000624563 1728 ntBASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 PEMT-203ENST00000395782 895 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 NME6-203ENST00000415644 849 ntTSL 2 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AC079316.1-201ENST00000548397 411 ntBASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 KRT90P-201ENST00000549264 1064 ntBASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 BLOC1S1-205ENST00000551926 531 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 SNX12-206ENST00000622259 661 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 DRD5P1-201ENST00000456605 1438 ntBASIC15.49■□□□□ 0.07
TM9SF3Q9HD45 ZNF131-214ENST00000509634 3340 ntAPPRIS P1 TSL 5 BASIC15.49■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms