Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 ALDOA-228ENST00000627059 2402 ntAPPRIS ALT1 TSL 5 BASIC13.78□□□□□ -0.2
MMP28Q9H239 DKFZP434A062-201ENST00000573103 5021 ntBASIC13.78□□□□□ -0.2
MMP28Q9H239 USP48-213ENST00000529637 3228 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
MMP28Q9H239 EHD1-202ENST00000359393 3618 ntAPPRIS P1 TSL 2 BASIC13.77□□□□□ -0.2
MMP28Q9H239 ARHGAP45-206ENST00000586866 4120 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
MMP28Q9H239 ZBED1-202ENST00000381222 4507 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MMP28Q9H239 ADAMTS7P1-201ENST00000613213 4793 ntBASIC13.77□□□□□ -0.2
MMP28Q9H239 ANO6-202ENST00000423947 5504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.2
MMP28Q9H239 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC13.77□□□□□ -0.2
MMP28Q9H239 RNF8-202ENST00000373479 5631 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.2
MMP28Q9H239 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC13.77□□□□□ -0.2
MMP28Q9H239 LILRA6-201ENST00000245621 1395 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
MMP28Q9H239 MARK4-201ENST00000262891 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 NDUFS7-202ENST00000313408 2818 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 NMNAT3-202ENST00000339837 1863 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 PRKD1-202ENST00000415220 3189 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
MMP28Q9H239 COX10-202ENST00000429152 875 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 TRIM10-204ENST00000449742 3546 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 AC087521.1-201ENST00000501541 2045 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 RNA5SP415-201ENST00000517246 115 ntBASIC13.77□□□□□ -0.21
MMP28Q9H239 ZCCHC7-209ENST00000534928 2828 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 CD63-204ENST00000546939 779 ntTSL 3 BASIC13.77□□□□□ -0.21
MMP28Q9H239 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.77□□□□□ -0.21
MMP28Q9H239 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC13.77□□□□□ -0.21
MMP28Q9H239 TCAP-202ENST00000578283 583 ntTSL 5 BASIC13.77□□□□□ -0.21
MMP28Q9H239 AC091167.2-201ENST00000579581 588 ntBASIC13.77□□□□□ -0.21
MMP28Q9H239 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC13.77□□□□□ -0.21
MMP28Q9H239 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 AC020765.3-201ENST00000613051 740 ntBASIC13.77□□□□□ -0.21
MMP28Q9H239 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 SLC6A20-202ENST00000358525 5423 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 SWAP70-201ENST00000318950 4882 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 PML-201ENST00000268058 4508 ntAPPRIS P4 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 JPH3-201ENST00000284262 3985 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC13.77□□□□□ -0.21
MMP28Q9H239 LINC01750-202ENST00000438293 3068 ntTSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 USP10-201ENST00000219473 3009 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 JARID2-201ENST00000341776 5755 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 MFAP3-201ENST00000322602 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 MYD88-201ENST00000396334 2850 ntAPPRIS P3 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 PHLDA1-201ENST00000266671 8069 ntAPPRIS P2 TSL 1 (best) BASIC13.77□□□□□ -0.21
MMP28Q9H239 SLC22A12-202ENST00000377567 2599 ntTSL 5 BASIC13.77□□□□□ -0.21
MMP28Q9H239 ABCB7-202ENST00000339447 2234 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 CSRP1-202ENST00000367306 2129 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 AL591623.1-201ENST00000417786 1960 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ZBED1P1-201ENST00000502364 1930 ntBASIC13.76□□□□□ -0.21
MMP28Q9H239 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 COQ8A-203ENST00000366779 5523 ntAPPRIS P1 TSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 PAM-201ENST00000304400 3156 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 TMPRSS6-201ENST00000346753 3197 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ITSN2-203ENST00000406921 4563 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ABLIM2-213ENST00000514025 2974 ntTSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 ZNF133-203ENST00000377671 2701 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 CNOT9-201ENST00000273064 4079 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 TDRD5-204ENST00000444136 3946 ntAPPRIS ALT1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 NRIP3-201ENST00000309166 3809 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 HAUS4P1-201ENST00000406739 1145 ntBASIC13.76□□□□□ -0.21
MMP28Q9H239 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC13.76□□□□□ -0.21
MMP28Q9H239 AC009947.1-201ENST00000444350 727 ntBASIC13.76□□□□□ -0.21
MMP28Q9H239 AC107918.2-201ENST00000530817 355 ntBASIC13.76□□□□□ -0.21
MMP28Q9H239 AC005412.3-201ENST00000580309 715 ntBASIC13.76□□□□□ -0.21
MMP28Q9H239 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC13.76□□□□□ -0.21
MMP28Q9H239 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ANO9-201ENST00000332826 2542 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 AL031280.1-201ENST00000436991 2224 ntTSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC13.76□□□□□ -0.21
MMP28Q9H239 SFSWAP-210ENST00000541286 3219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 GAK-214ENST00000511163 4280 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.76□□□□□ -0.21
MMP28Q9H239 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC13.76□□□□□ -0.21
MMP28Q9H239 LINC01782-201ENST00000591212 2908 ntTSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
MMP28Q9H239 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC13.76□□□□□ -0.21
MMP28Q9H239 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.76□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms