Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC022532.1-201ENST00000624563 1728 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 NAT8-201ENST00000272425 947 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 MGST3-203ENST00000367885 680 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RPL28-203ENST00000428193 573 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 AL355864.2-201ENST00000447420 863 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 BCRP2-202ENST00000447763 634 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 CTBP2P5-201ENST00000454986 1264 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 BCRP6-201ENST00000510112 632 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 BCRP7-201ENST00000511549 544 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RPL28-207ENST00000558815 616 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RAB34-222ENST00000625712 994 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 AL033527.4-201ENST00000641026 673 ntBASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 POLL-217ENST00000628479 1953 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 CCDC8-201ENST00000307522 3213 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TRAIPQ9BWF2 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 PDE4DIP-201ENST00000313431 5676 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 AC134312.5-201ENST00000568031 1313 ntBASIC16.96■□□□□ 0.3
TRAIPQ9BWF2 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 GRM5-205ENST00000455756 7927 ntAPPRIS P3 TSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 FLT3LG-201ENST00000204637 1046 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 Z94721.1-201ENST00000444102 385 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 RMDN1-212ENST00000519966 1164 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 AC107373.2-201ENST00000607735 490 ntBASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 PKP4-AS1-203ENST00000629904 1951 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC16.95■□□□□ 0.3
TRAIPQ9BWF2 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 DYSF-207ENST00000409762 6727 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 DYSF-211ENST00000429174 6739 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAIPQ9BWF2 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms