Protein–RNA interactions for Protein: Q7Z3Y7

KRT28, Keratin, type I cytoskeletal 28, humanhuman

Predictions only

Length 464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT28Q7Z3Y7 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 ZBTB5-201ENST00000307750 4627 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 LINC02447-202ENST00000501888 2146 ntBASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 MBLAC2-202ENST00000514906 1936 ntBASIC20.57■□□□□ 0.88
KRT28Q7Z3Y7 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 PLEKHB2-207ENST00000438882 1460 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AC026688.2-201ENST00000518984 1734 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 ADAMTSL1-204ENST00000380545 1562 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AL157414.3-201ENST00000624276 1954 ntBASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 MAP2K3-201ENST00000316920 1246 ntTSL 5 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 OR2K2-202ENST00000374428 1038 ntBASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 KRT18P66-201ENST00000452970 1269 ntBASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 LGALS3-204ENST00000554715 916 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AF111169.4-201ENST00000556368 749 ntTSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 HS3ST3A1-202ENST00000578576 750 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 FAM236A-201ENST00000593662 453 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 FAM236B-201ENST00000596535 465 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AC138696.2-201ENST00000607376 223 ntBASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 AMT-239ENST00000636865 1914 ntTSL 5 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 FAM90A7P-201ENST00000382628 1395 ntBASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 FAM90A23P-201ENST00000400136 1395 ntBASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
KRT28Q7Z3Y7 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 MTHFR-217ENST00000641820 1569 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 MST1L-201ENST00000442552 2185 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 AC244394.1-201ENST00000435000 1665 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 ACE-204ENST00000428043 5120 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 RPL3-202ENST00000401609 1289 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 ZNF124-204ENST00000491356 956 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 SCARNA21-201ENST00000517026 139 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 POU5F1P2-201ENST00000521750 823 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 AC090735.1-201ENST00000523881 488 ntTSL 4 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 AC005332.8-201ENST00000622750 2735 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 AC020910.5-201ENST00000623668 1865 ntBASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
KRT28Q7Z3Y7 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AL360270.3-201ENST00000609118 1348 ntBASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AL008718.2-201ENST00000609206 1313 ntBASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 ACYP1-201ENST00000238618 627 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AC239868.1-201ENST00000369385 493 ntBASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AL606491.1-201ENST00000412797 483 ntTSL 3 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AC069277.1-202ENST00000414438 761 ntTSL 3 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 APOL3-207ENST00000424878 1240 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 AL731661.1-201ENST00000438217 758 ntTSL 5 BASIC20.54■□□□□ 0.88
KRT28Q7Z3Y7 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms