Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 TP53TG3HP-202ENST00000569755 579 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 AC140912.1-201ENST00000577171 1054 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 SPDYE22P-201ENST00000582158 798 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CHCHD2P3-201ENST00000603038 451 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 AL662799.1-202ENST00000614205 422 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 AC092127.1-201ENST00000567093 3455 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 CLK3P2-201ENST00000427566 1453 ntBASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 SHH-201ENST00000297261 4454 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
NUP54Q7Z3B4 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 ARHGAP9-203ENST00000424809 2569 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 OR2I1P-210ENST00000642037 4691 ntBASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 REEP3-201ENST00000373758 5205 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 RPL5P21-201ENST00000404620 815 ntBASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AL034550.1-201ENST00000442179 986 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AC123567.1-201ENST00000548294 1261 ntBASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 TMEM261P1-201ENST00000604899 340 ntBASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 PPT1-215ENST00000641471 2368 ntBASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 VOPP1-207ENST00000428648 2866 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
NUP54Q7Z3B4 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 CHD1L-203ENST00000369259 2358 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.11
NUP54Q7Z3B4 PTPN13-203ENST00000427191 8487 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
NUP54Q7Z3B4 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms