Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 ATG2A-201ENST00000377264 6357 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 AC093004.1-201ENST00000508850 424 ntBASIC18.7■□□□□ 0.58
VPS53Q5VIR6 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 CDK4-206ENST00000549606 558 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 GPX4-206ENST00000588919 803 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 BARD1-209ENST00000613192 703 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 EPB41L3-203ENST00000400111 4259 ntTSL 5 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 NISCH-202ENST00000420808 2589 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 TDRP-205ENST00000613071 3421 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
VPS53Q5VIR6 AC126365.1-201ENST00000578585 1514 ntBASIC18.69■□□□□ 0.58
VPS53Q5VIR6 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 INSIG1-201ENST00000340368 3010 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 HGNC:18790-202ENST00000421177 4172 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 ASAH1-210ENST00000520781 2245 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 LAPTM4A-201ENST00000175091 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 KRT18P43-201ENST00000469825 1281 ntBASIC18.69■□□□□ 0.58
VPS53Q5VIR6 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 WASH4P-201ENST00000564273 1246 ntBASIC18.69■□□□□ 0.58
VPS53Q5VIR6 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC18.69■□□□□ 0.58
VPS53Q5VIR6 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.69■□□□□ 0.58
VPS53Q5VIR6 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 RASA4B-207ENST00000541662 2794 ntAPPRIS P2 TSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 TNIP1-219ENST00000524280 1716 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC18.69■□□□□ 0.58
VPS53Q5VIR6 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 AC084364.1-201ENST00000551967 1556 ntBASIC18.68■□□□□ 0.58
VPS53Q5VIR6 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 SLC6A13-203ENST00000445055 1950 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 POLL-217ENST00000628479 1953 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 PIN1P1-201ENST00000412108 996 ntBASIC18.68■□□□□ 0.58
VPS53Q5VIR6 DFFBP1-201ENST00000433250 979 ntBASIC18.68■□□□□ 0.58
VPS53Q5VIR6 RN7SL399P-201ENST00000471648 279 ntBASIC18.68■□□□□ 0.58
VPS53Q5VIR6 AC000095.1-201ENST00000603208 874 ntBASIC18.68■□□□□ 0.58
VPS53Q5VIR6 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 MECR-202ENST00000373791 2416 ntTSL 2 BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 PPL-201ENST00000345988 6238 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
VPS53Q5VIR6 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 57 ms