Protein–RNA interactions for Protein: Q12946

FOXF1, Forkhead box protein F1, humanhuman

Predictions only

Length 379 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXF1Q12946 ADPRHL1-202ENST00000375418 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 MRPL55-215ENST00000366742 630 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
FOXF1Q12946 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXF1Q12946 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.02□□□□□ -0.17
FOXF1Q12946 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC14.02□□□□□ -0.17
FOXF1Q12946 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXF1Q12946 RPL13AP25-201ENST00000484130 612 ntBASIC14.02□□□□□ -0.17
FOXF1Q12946 ELK1P1-201ENST00000485699 580 ntBASIC14.02□□□□□ -0.17
FOXF1Q12946 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXF1Q12946 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC14.02□□□□□ -0.17
FOXF1Q12946 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.02□□□□□ -0.17
FOXF1Q12946 COX11-202ENST00000571584 1108 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXF1Q12946 AC107373.2-201ENST00000607735 490 ntBASIC14.02□□□□□ -0.17
FOXF1Q12946 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXF1Q12946 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC14.02□□□□□ -0.17
FOXF1Q12946 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC14.02□□□□□ -0.17
FOXF1Q12946 TBC1D3P5-202ENST00000581469 2513 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 GNB4-201ENST00000232564 6434 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
FOXF1Q12946 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC14.02□□□□□ -0.17
FOXF1Q12946 GOLGA8H-201ENST00000566740 1899 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 GOLGA8J-201ENST00000567927 1899 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 LMAN1-201ENST00000251047 5521 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 NSUN5P1-206ENST00000457988 1836 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 CAMTA1-201ENST00000303635 8444 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 AC144831.1-201ENST00000573312 2656 ntBASIC14.01□□□□□ -0.17
FOXF1Q12946 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 AMT-232ENST00000636199 1546 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 GALT-202ENST00000450095 1280 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.01□□□□□ -0.17
FOXF1Q12946 AC092552.1-201ENST00000547243 906 ntBASIC14.01□□□□□ -0.17
FOXF1Q12946 SPDYE22P-201ENST00000582158 798 ntBASIC14.01□□□□□ -0.17
FOXF1Q12946 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC14.01□□□□□ -0.17
FOXF1Q12946 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC14.01□□□□□ -0.17
FOXF1Q12946 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC14.01□□□□□ -0.17
FOXF1Q12946 SNHG8-201ENST00000602414 672 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 SNHG8-205ENST00000602819 470 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC14.01□□□□□ -0.17
FOXF1Q12946 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 AP000866.1-201ENST00000499143 2886 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 KRT82-201ENST00000257974 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 EXOC3L1-201ENST00000314586 2510 ntAPPRIS P1 TSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 SCAP-215ENST00000545718 2950 ntTSL 5 BASIC14.01□□□□□ -0.17
FOXF1Q12946 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC14.01□□□□□ -0.17
FOXF1Q12946 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.01□□□□□ -0.17
FOXF1Q12946 TUBBP5-201ENST00000290377 1563 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
FOXF1Q12946 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
FOXF1Q12946 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 TNXB-209ENST00000613214 6842 ntTSL 5 BASIC14□□□□□ -0.17
FOXF1Q12946 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
FOXF1Q12946 UBE2J1-201ENST00000435041 4290 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 DRD5P1-201ENST00000456605 1438 ntBASIC14□□□□□ -0.17
FOXF1Q12946 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC14□□□□□ -0.17
FOXF1Q12946 MYB-242ENST00000618728 3545 ntTSL 5 BASIC14□□□□□ -0.17
FOXF1Q12946 LIMS1-202ENST00000338045 1876 ntTSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 THAP10-201ENST00000249861 2399 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
FOXF1Q12946 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 77.9 ms