Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 UPF3B-202ENST00000345865 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 AP1S3-206ENST00000443700 1785 ntTSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC14.7□□□□□ -0.06
LIM2P55344 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.7□□□□□ -0.06
LIM2P55344 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC14.7□□□□□ -0.06
LIM2P55344 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 GSN-203ENST00000373808 2664 ntTSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 CPT2-201ENST00000371486 3094 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIM2P55344 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 POR-201ENST00000394893 2532 ntTSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 ABI3-201ENST00000225941 2109 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.69□□□□□ -0.06
LIM2P55344 RER1-203ENST00000378513 3000 ntTSL 3 BASIC14.69□□□□□ -0.06
LIM2P55344 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIM2P55344 HID1-202ENST00000425042 3271 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 STRA6-218ENST00000574278 2455 ntTSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 PCDHB8-201ENST00000239444 2740 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIM2P55344 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIM2P55344 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 GSN-215ENST00000545652 2428 ntTSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIM2P55344 AL353779.1-201ENST00000434793 351 ntBASIC14.69□□□□□ -0.06
LIM2P55344 AC106772.1-201ENST00000506629 591 ntTSL 3 BASIC14.69□□□□□ -0.06
LIM2P55344 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC14.69□□□□□ -0.06
LIM2P55344 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC14.69□□□□□ -0.06
LIM2P55344 API5-211ENST00000534695 560 ntTSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 POLD4-211ENST00000539074 714 ntTSL 3 BASIC14.69□□□□□ -0.06
LIM2P55344 CDK4-206ENST00000549606 558 ntTSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC14.69□□□□□ -0.06
LIM2P55344 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC14.69□□□□□ -0.06
LIM2P55344 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC14.69□□□□□ -0.06
LIM2P55344 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 PAK1-210ENST00000528203 1878 ntTSL 2 BASIC14.69□□□□□ -0.06
LIM2P55344 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC14.69□□□□□ -0.06
LIM2P55344 ARMC6-206ENST00000535612 2488 ntTSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.69□□□□□ -0.06
LIM2P55344 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
LIM2P55344 BUD13-201ENST00000260210 2196 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 RHNO1-202ENST00000461997 1655 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
LIM2P55344 HNRNPU-204ENST00000440865 3207 ntTSL 2 BASIC14.68□□□□□ -0.06
LIM2P55344 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 LAP3-211ENST00000618908 2100 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 BET1L-201ENST00000325147 2916 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.68□□□□□ -0.06
LIM2P55344 LCE3E-201ENST00000368789 611 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 AC087499.6-201ENST00000411576 835 ntBASIC14.68□□□□□ -0.06
LIM2P55344 LINC00475-203ENST00000417983 703 ntTSL 2 BASIC14.68□□□□□ -0.06
LIM2P55344 AL691459.1-201ENST00000438589 407 ntTSL 3 BASIC14.68□□□□□ -0.06
LIM2P55344 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC14.68□□□□□ -0.06
LIM2P55344 METTL21A-209ENST00000448823 869 ntTSL 5 BASIC14.68□□□□□ -0.06
LIM2P55344 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC14.68□□□□□ -0.06
LIM2P55344 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC14.68□□□□□ -0.06
LIM2P55344 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC14.68□□□□□ -0.06
LIM2P55344 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC14.68□□□□□ -0.06
LIM2P55344 AC093726.1-201ENST00000608064 963 ntBASIC14.68□□□□□ -0.06
LIM2P55344 GRIA3-205ENST00000611689 936 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 DPEP1-202ENST00000393092 1734 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
LIM2P55344 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.68□□□□□ -0.06
LIM2P55344 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 64.4 ms