Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.61■□□□□ 0.25
VCPP55072 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.61■□□□□ 0.25
VCPP55072 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.61■□□□□ 0.25
VCPP55072 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 LINC02279-201ENST00000553435 737 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 AL021578.1-201ENST00000613646 709 ntBASIC16.61■□□□□ 0.25
VCPP55072 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 UBE2V2-205ENST00000521346 1322 ntTSL 3 BASIC16.61■□□□□ 0.25
VCPP55072 DNM1-201ENST00000341179 3254 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 CAST-224ENST00000508830 2539 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
VCPP55072 WSB2-202ENST00000441406 1353 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 C3orf67-201ENST00000295966 2650 ntTSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC16.61■□□□□ 0.25
VCPP55072 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 GCLM-201ENST00000370238 4857 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCPP55072 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC16.6■□□□□ 0.25
VCPP55072 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 THEMIS2-202ENST00000373921 2687 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VCPP55072 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
VCPP55072 NSL1-201ENST00000366976 722 ntTSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 LDLRAD1-201ENST00000371360 785 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VCPP55072 VAMP1-203ENST00000400911 1068 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC16.6■□□□□ 0.25
VCPP55072 PSMG3-203ENST00000404674 774 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 SPDYE17-201ENST00000412399 783 ntBASIC16.6■□□□□ 0.25
VCPP55072 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.6■□□□□ 0.25
VCPP55072 USB1-202ENST00000423271 1217 ntTSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 C2orf69P2-201ENST00000562032 1123 ntBASIC16.6■□□□□ 0.25
VCPP55072 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.6■□□□□ 0.25
VCPP55072 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.6■□□□□ 0.25
VCPP55072 AL354740.1-203ENST00000593917 424 ntTSL 3 BASIC16.6■□□□□ 0.25
VCPP55072 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
VCPP55072 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VCPP55072 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 NECAP2-201ENST00000337132 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 RBFOX1-205ENST00000436368 1530 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCPP55072 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VCPP55072 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 MYRIP-202ENST00000396217 4877 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 RASGRF1-203ENST00000558480 6237 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 MLKL-202ENST00000308807 2523 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 DDOST-201ENST00000375048 2079 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC16.59■□□□□ 0.25
VCPP55072 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 LINC01759-201ENST00000412639 985 ntTSL 3 BASIC16.59■□□□□ 0.25
VCPP55072 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 TNFRSF14-AS1-206ENST00000452793 569 ntTSL 3 BASIC16.59■□□□□ 0.25
VCPP55072 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC16.59■□□□□ 0.25
VCPP55072 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 AC026774.1-201ENST00000503652 691 ntTSL 3 BASIC16.59■□□□□ 0.25
VCPP55072 BTNL8-205ENST00000505126 1294 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCPP55072 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC16.59■□□□□ 0.25
VCPP55072 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC16.59■□□□□ 0.25
VCPP55072 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.59■□□□□ 0.25
VCPP55072 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC16.59■□□□□ 0.25
VCPP55072 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms