Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HMGCS2P54868 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 SDCCAG3P2-201ENST00000326105 1023 ntBASIC17.68■□□□□ 0.42
HMGCS2P54868 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HMGCS2P54868 PSME1-202ENST00000382708 1136 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC012506.3-201ENST00000415245 892 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGCS2P54868 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 SPTLC1P5-201ENST00000450718 252 ntBASIC17.68■□□□□ 0.42
HMGCS2P54868 TCEAL4-209ENST00000472745 1571 ntAPPRIS P3 TSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGCS2P54868 SDHD-202ENST00000525291 790 ntTSL 3 BASIC17.68■□□□□ 0.42
HMGCS2P54868 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC17.68■□□□□ 0.42
HMGCS2P54868 MSRB3-209ENST00000540804 884 ntTSL 2 BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC138466.3-201ENST00000619983 221 ntBASIC17.68■□□□□ 0.42
HMGCS2P54868 SLC26A10-201ENST00000320442 2389 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC17.68■□□□□ 0.42
HMGCS2P54868 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HMGCS2P54868 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 PLAGL1-211ENST00000625622 3216 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 SST-201ENST00000287641 618 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 C2orf15-202ENST00000409684 1058 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
HMGCS2P54868 AL354877.1-201ENST00000424412 413 ntBASIC17.67■□□□□ 0.42
HMGCS2P54868 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 AC078852.2-201ENST00000504748 527 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 LINC01278-203ENST00000608788 820 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 AC097724.1-201ENST00000609581 426 ntBASIC17.67■□□□□ 0.42
HMGCS2P54868 LINC01278-207ENST00000610234 555 ntTSL 4 BASIC17.67■□□□□ 0.42
HMGCS2P54868 HPSE2-205ENST00000614306 447 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 MEF2C-227ENST00000626391 1182 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 MEF2C-231ENST00000628656 1254 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC17.67■□□□□ 0.42
HMGCS2P54868 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 CPSF1-213ENST00000620219 4462 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 GEMIN7-201ENST00000270257 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 C1orf228-219ENST00000535358 1685 ntAPPRIS P2 TSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 GHRLOS-201ENST00000439539 1708 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HMGCS2P54868 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC17.67■□□□□ 0.42
HMGCS2P54868 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGCS2P54868 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC17.66■□□□□ 0.42
HMGCS2P54868 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 SLC25A26-201ENST00000336733 1023 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 AL136309.1-201ENST00000403917 691 ntBASIC17.66■□□□□ 0.42
HMGCS2P54868 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
HMGCS2P54868 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.66■□□□□ 0.42
HMGCS2P54868 LILRA5-204ENST00000486742 1078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
HMGCS2P54868 IMP3P2-201ENST00000489760 475 ntBASIC17.66■□□□□ 0.42
HMGCS2P54868 FTLP10-202ENST00000505798 471 ntBASIC17.66■□□□□ 0.42
HMGCS2P54868 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC17.66■□□□□ 0.42
HMGCS2P54868 AC113192.2-201ENST00000525320 308 ntTSL 3 BASIC17.66■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.9 ms