Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 RNF150-201ENST00000306799 4535 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 IMPACT-201ENST00000284202 3792 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 ZFYVE28-211ENST00000515312 3247 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 HLA-DRB6-201ENST00000411500 1235 ntBASIC18.17■□□□□ 0.5
MRE11P49959 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC18.17■□□□□ 0.5
MRE11P49959 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC18.17■□□□□ 0.5
MRE11P49959 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.17■□□□□ 0.5
MRE11P49959 TCAP-202ENST00000578283 583 ntTSL 5 BASIC18.17■□□□□ 0.5
MRE11P49959 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC18.17■□□□□ 0.5
MRE11P49959 NFATC4-206ENST00000539237 5686 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
MRE11P49959 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 CGB7-203ENST00000597853 3386 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 PAX6-202ENST00000379107 2579 ntAPPRIS P4 TSL 5 BASIC18.17■□□□□ 0.5
MRE11P49959 HIST3H2BB-201ENST00000620438 2364 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
MRE11P49959 ATP6V0A1-203ENST00000393829 3028 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 PPM1F-202ENST00000397495 1778 ntTSL 2 BASIC18.17■□□□□ 0.5
MRE11P49959 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC18.17■□□□□ 0.5
MRE11P49959 GTF2I-212ENST00000573035 4548 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 MYH11-201ENST00000300036 6029 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
MRE11P49959 TCAF1P1-201ENST00000414990 2232 ntBASIC18.17■□□□□ 0.5
MRE11P49959 SLC7A8-212ENST00000529705 1819 ntTSL 2 BASIC18.16■□□□□ 0.5
MRE11P49959 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 ST20-AS1-201ENST00000560255 4223 ntBASIC18.16■□□□□ 0.5
MRE11P49959 NCF1C-201ENST00000438382 1427 ntBASIC18.16■□□□□ 0.5
MRE11P49959 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 SIGLEC16-201ENST00000599858 1437 ntBASIC18.16■□□□□ 0.5
MRE11P49959 PPP5D1-201ENST00000414155 1882 ntAPPRIS P5 TSL 2 BASIC18.16■□□□□ 0.5
MRE11P49959 STRA6-205ENST00000432245 1889 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 ZNF718-202ENST00000609714 2772 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 PRODH2-201ENST00000301175 1677 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 C12orf49-201ENST00000261318 8404 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 NUTM2A-202ENST00000381707 3290 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 NUTM2B-203ENST00000429828 3292 ntAPPRIS P2 TSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 NUTM2E-201ENST00000429984 3292 ntAPPRIS P5 TSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 HTR3A-205ENST00000504030 2432 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
MRE11P49959 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC18.16■□□□□ 0.5
MRE11P49959 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.16■□□□□ 0.5
MRE11P49959 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.16■□□□□ 0.5
MRE11P49959 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 AC015712.1-203ENST00000559331 593 ntTSL 3 BASIC18.16■□□□□ 0.5
MRE11P49959 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 AP001350.2-201ENST00000625104 1094 ntBASIC18.16■□□□□ 0.5
MRE11P49959 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 MYADM-203ENST00000391769 3186 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 PIDD1-201ENST00000347755 2998 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 DDIAS-203ENST00000525361 1830 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
MRE11P49959 MPHOSPH10-205ENST00000498451 2068 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 HNRNPH3-201ENST00000265866 2339 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 MAPT-206ENST00000415613 2331 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 MLLT10-201ENST00000307729 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 CAMKK2-201ENST00000324774 5598 ntAPPRIS P4 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
MRE11P49959 TMEM117-207ENST00000551577 2643 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
MRE11P49959 TRMT1-201ENST00000221504 2179 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 LINC00163-201ENST00000434081 2155 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC18.15■□□□□ 0.5
MRE11P49959 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 NFATC4-207ENST00000553469 2566 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 AL662899.1-201ENST00000461287 2332 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
MRE11P49959 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC18.15■□□□□ 0.5
MRE11P49959 CDYL2-203ENST00000562812 2086 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 CDYL2-204ENST00000563890 2086 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 CDYL2-205ENST00000566173 2086 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 APBB3-201ENST00000354402 1810 ntTSL 5 BASIC18.15■□□□□ 0.5
MRE11P49959 AMT-202ENST00000395338 1831 ntAPPRIS ALT1 TSL 1 (best) BASIC18.15■□□□□ 0.5
MRE11P49959 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms