Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 TGFB1I1-214ENST00000567607 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 RTN1-209ENST00000611068 2647 ntTSL 5 BASIC17.64■□□□□ 0.41
SMARCA1P28370 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 LBX2-201ENST00000341396 886 ntTSL 3 BASIC17.64■□□□□ 0.41
SMARCA1P28370 UCK1-203ENST00000372211 2114 ntTSL 3 BASIC17.64■□□□□ 0.41
SMARCA1P28370 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 EIF3FP3-201ENST00000434851 1086 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC17.64■□□□□ 0.41
SMARCA1P28370 BCRP2-202ENST00000447763 634 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC17.64■□□□□ 0.41
SMARCA1P28370 AC106760.1-201ENST00000508690 800 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 BCRP6-201ENST00000510112 632 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 BCRP7-201ENST00000511549 544 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 AC100818.1-201ENST00000524167 563 ntTSL 4 BASIC17.64■□□□□ 0.41
SMARCA1P28370 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 RN7SL48P-201ENST00000579283 293 ntBASIC17.64■□□□□ 0.41
SMARCA1P28370 PFAS-212ENST00000625942 396 ntTSL 5 BASIC17.64■□□□□ 0.41
SMARCA1P28370 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
SMARCA1P28370 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 KRT71-201ENST00000267119 2265 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 ASTN2-202ENST00000313400 4747 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
SMARCA1P28370 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
SMARCA1P28370 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 MTDH-201ENST00000336273 6177 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
SMARCA1P28370 PGR-210ENST00000619228 3038 ntTSL 5 BASIC17.64■□□□□ 0.41
SMARCA1P28370 TGFB1I1-201ENST00000361773 1773 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC17.63■□□□□ 0.41
SMARCA1P28370 PDE1C-202ENST00000396182 2420 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 AC104640.1-201ENST00000562617 2109 ntBASIC17.63■□□□□ 0.41
SMARCA1P28370 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 GNB2-202ENST00000393924 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC17.63■□□□□ 0.41
SMARCA1P28370 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 ARFIP1-204ENST00000429148 1599 ntTSL 2 BASIC17.63■□□□□ 0.41
SMARCA1P28370 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.63■□□□□ 0.41
SMARCA1P28370 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 GNG5-201ENST00000370641 920 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SMARCA1P28370 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SMARCA1P28370 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 HIST1H2BPS3-201ENST00000419683 341 ntBASIC17.63■□□□□ 0.41
SMARCA1P28370 AC112492.5-201ENST00000421897 457 ntBASIC17.63■□□□□ 0.41
SMARCA1P28370 WBP2-203ENST00000433525 928 ntTSL 2 BASIC17.63■□□□□ 0.41
SMARCA1P28370 AC016694.1-201ENST00000434179 700 ntBASIC17.63■□□□□ 0.41
SMARCA1P28370 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC17.63■□□□□ 0.41
SMARCA1P28370 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
SMARCA1P28370 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC17.63■□□□□ 0.41
SMARCA1P28370 TMEM14B-204ENST00000461342 559 ntTSL 2 BASIC17.63■□□□□ 0.41
SMARCA1P28370 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC17.63■□□□□ 0.41
SMARCA1P28370 FAM86B1-216ENST00000533852 2043 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
SMARCA1P28370 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.63■□□□□ 0.41
SMARCA1P28370 PRPF3-201ENST00000324862 2433 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 OLIG2-201ENST00000333337 3262 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
SMARCA1P28370 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
SMARCA1P28370 AC046158.3-201ENST00000624947 2558 ntBASIC17.63■□□□□ 0.41
SMARCA1P28370 AC073347.1-201ENST00000421633 2643 ntBASIC17.63■□□□□ 0.41
SMARCA1P28370 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 SNCAIP-207ENST00000504884 1885 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
SMARCA1P28370 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.62■□□□□ 0.41
SMARCA1P28370 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC17.62■□□□□ 0.41
SMARCA1P28370 REXO1L5P-201ENST00000622260 2098 ntBASIC17.62■□□□□ 0.41
SMARCA1P28370 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
SMARCA1P28370 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 LAMC1-201ENST00000258341 7889 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
SMARCA1P28370 GUK1-206ENST00000366723 845 ntTSL 5 BASIC17.62■□□□□ 0.41
SMARCA1P28370 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 CNN2P8-201ENST00000421872 913 ntBASIC17.62■□□□□ 0.41
SMARCA1P28370 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 CDRT15-202ENST00000431716 655 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
SMARCA1P28370 SIRPB2-203ENST00000444444 884 ntTSL 2 BASIC17.62■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms