Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A3P25940 AP000911.1-202ENST00000532706 543 ntTSL 4 BASIC18.94■□□□□ 0.62
COL5A3P25940 AC024361.2-201ENST00000574471 898 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 AC015909.3-201ENST00000572855 1794 ntBASIC18.94■□□□□ 0.62
COL5A3P25940 CASQ1-201ENST00000368078 1897 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 TOM1-209ENST00000447733 2317 ntTSL 2 BASIC18.94■□□□□ 0.62
COL5A3P25940 CCDC197-206ENST00000640978 1429 ntAPPRIS ALT2 TSL 5 BASIC18.94■□□□□ 0.62
COL5A3P25940 UPK3BL1-201ENST00000340457 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 ZNF581-203ENST00000587252 1324 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL5A3P25940 CICP13-201ENST00000422015 2789 ntBASIC18.94■□□□□ 0.62
COL5A3P25940 FH-201ENST00000366560 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 AL024498.2-201ENST00000480294 1589 ntAPPRIS P1 TSL 2 BASIC18.94■□□□□ 0.62
COL5A3P25940 FAM90A2P-201ENST00000511144 1395 ntBASIC18.94■□□□□ 0.62
COL5A3P25940 FAM90A25P-201ENST00000528404 1395 ntBASIC18.94■□□□□ 0.62
COL5A3P25940 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 AC068134.1-201ENST00000441266 481 ntTSL 3 BASIC18.94■□□□□ 0.62
COL5A3P25940 AC131206.1-201ENST00000538078 1211 ntBASIC18.94■□□□□ 0.62
COL5A3P25940 PLIN5-202ENST00000586133 907 ntTSL 3 BASIC18.94■□□□□ 0.62
COL5A3P25940 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC18.94■□□□□ 0.62
COL5A3P25940 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 VAC14-202ENST00000536184 2161 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 ABCG5-202ENST00000405322 2896 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 PCCB-204ENST00000462637 1715 ntAPPRIS ALT2 TSL 3 BASIC18.93■□□□□ 0.62
COL5A3P25940 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 MIR557-201ENST00000385239 98 ntBASIC18.93■□□□□ 0.62
COL5A3P25940 AL512430.1-201ENST00000392575 860 ntBASIC18.93■□□□□ 0.62
COL5A3P25940 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A3P25940 MYLK-AS1-202ENST00000470449 760 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 NAT9-220ENST00000582870 896 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A3P25940 PRMT5-AS1-206ENST00000599580 847 ntTSL 5 BASIC18.93■□□□□ 0.62
COL5A3P25940 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.93■□□□□ 0.62
COL5A3P25940 AP000845.1-201ENST00000581677 2131 ntBASIC18.93■□□□□ 0.62
COL5A3P25940 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 SERPINE2-202ENST00000409304 2161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.93■□□□□ 0.62
COL5A3P25940 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC18.93■□□□□ 0.62
COL5A3P25940 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 HMBOX1-210ENST00000523613 1730 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
COL5A3P25940 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC18.92■□□□□ 0.62
COL5A3P25940 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC18.92■□□□□ 0.62
COL5A3P25940 CTCFL-210ENST00000481655 1512 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC18.92■□□□□ 0.62
COL5A3P25940 KRTAP2-4-201ENST00000394015 764 ntAPPRIS P1 BASIC18.92■□□□□ 0.62
COL5A3P25940 XBP1P1-201ENST00000436573 652 ntBASIC18.92■□□□□ 0.62
COL5A3P25940 SKA2-202ENST00000437036 625 ntTSL 2 BASIC18.92■□□□□ 0.62
COL5A3P25940 AC006455.8-201ENST00000451381 351 ntTSL 3 BASIC18.92■□□□□ 0.62
COL5A3P25940 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC18.92■□□□□ 0.62
COL5A3P25940 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC18.92■□□□□ 0.62
COL5A3P25940 AP002803.1-201ENST00000528836 498 ntBASIC18.92■□□□□ 0.62
COL5A3P25940 AL049833.2-202ENST00000556773 626 ntTSL 3 BASIC18.92■□□□□ 0.62
COL5A3P25940 MIR3188-201ENST00000583494 85 ntBASIC18.92■□□□□ 0.62
COL5A3P25940 SMIM22-209ENST00000591870 355 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
COL5A3P25940 MIR6842-201ENST00000612539 65 ntBASIC18.92■□□□□ 0.62
COL5A3P25940 TINF2-202ENST00000399423 2168 ntAPPRIS ALT2 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 SLC1A5-201ENST00000412532 1750 ntTSL 2 BASIC18.92■□□□□ 0.62
COL5A3P25940 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
COL5A3P25940 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 LILRP1-201ENST00000444199 1370 ntBASIC18.92■□□□□ 0.62
COL5A3P25940 ASCC2-201ENST00000307790 2793 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.92■□□□□ 0.62
COL5A3P25940 TMEM258-207ENST00000543510 1692 ntTSL 2 BASIC18.92■□□□□ 0.62
COL5A3P25940 FGFR2-215ENST00000457416 3061 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
COL5A3P25940 SPACA3-201ENST00000269053 817 ntAPPRIS P2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 PSMB10-201ENST00000358514 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 TNNT2-202ENST00000360372 969 ntTSL 5 BASIC18.91■□□□□ 0.62
COL5A3P25940 TNNT2-204ENST00000367317 1050 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
COL5A3P25940 TNNT2-209ENST00000421663 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 AL080250.1-201ENST00000438676 445 ntTSL 5 BASIC18.91■□□□□ 0.62
COL5A3P25940 AC004869.1-201ENST00000440935 540 ntTSL 4 BASIC18.91■□□□□ 0.62
COL5A3P25940 IMPA1-203ENST00000449740 1180 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 AP000696.1-201ENST00000457669 1133 ntTSL 3 BASIC18.91■□□□□ 0.62
COL5A3P25940 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
COL5A3P25940 NDUFC1-209ENST00000539002 1198 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL5A3P25940 NAA40-206ENST00000542163 1035 ntTSL 2 BASIC18.91■□□□□ 0.62
COL5A3P25940 NDUFC1-211ENST00000544855 1257 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
COL5A3P25940 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC18.91■□□□□ 0.62
COL5A3P25940 AL132709.1-203ENST00000555103 569 ntTSL 4 BASIC18.91■□□□□ 0.62
COL5A3P25940 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
COL5A3P25940 TPM1-223ENST00000560445 485 ntTSL 3 BASIC18.91■□□□□ 0.62
COL5A3P25940 DNM1P30-201ENST00000563586 452 ntBASIC18.91■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms